View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19042_low_15 (Length: 231)

Name: NF19042_low_15
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19042_low_15
NF19042_low_15
[»] chr7 (8 HSPs)
chr7 (94-144)||(17500798-17500848)
chr7 (94-144)||(17552366-17552416)
chr7 (92-143)||(47644811-47644862)
chr7 (94-143)||(27070589-27070638)
chr7 (94-143)||(27207675-27207724)
chr7 (94-139)||(49089084-49089129)
chr7 (94-143)||(30391248-30391297)
chr7 (102-143)||(31467706-31467747)
[»] chr1 (19 HSPs)
chr1 (94-144)||(52417632-52417682)
chr1 (94-144)||(30530319-30530369)
chr1 (86-143)||(51250203-51250260)
chr1 (94-144)||(34002240-34002290)
chr1 (94-144)||(45470759-45470809)
chr1 (98-144)||(5959489-5959535)
chr1 (94-144)||(8464433-8464483)
chr1 (94-143)||(4154684-4154733)
chr1 (94-127)||(52078539-52078572)
chr1 (102-144)||(7371876-7371918)
chr1 (94-144)||(19920863-19920913)
chr1 (97-143)||(40139215-40139261)
chr1 (94-143)||(4511697-4511746)
chr1 (94-143)||(5315313-5315362)
chr1 (94-143)||(33422139-33422188)
chr1 (94-143)||(33669743-33669792)
chr1 (94-143)||(44112556-44112605)
chr1 (94-143)||(50017343-50017392)
chr1 (94-143)||(52369031-52369080)
[»] chr4 (16 HSPs)
chr4 (19-75)||(12271123-12271179)
chr4 (94-143)||(34114037-34114086)
chr4 (94-144)||(13267398-13267448)
chr4 (94-144)||(31147332-31147382)
chr4 (106-144)||(46912731-46912769)
chr4 (94-143)||(4514185-4514234)
chr4 (94-143)||(10096662-10096711)
chr4 (94-143)||(11012227-11012276)
chr4 (94-143)||(40335879-40335928)
chr4 (92-144)||(32365585-32365637)
chr4 (97-143)||(29949596-29949642)
chr4 (94-143)||(17363332-17363381)
chr4 (102-143)||(33438147-33438188)
chr4 (94-143)||(44133633-44133682)
chr4 (94-134)||(31804251-31804291)
chr4 (92-144)||(41495114-41495166)
[»] chr8 (9 HSPs)
chr8 (86-144)||(5642302-5642360)
chr8 (86-144)||(5644243-5644301)
chr8 (94-143)||(8074645-8074694)
chr8 (94-143)||(324000-324049)
chr8 (94-142)||(7129636-7129684)
chr8 (94-134)||(35594655-35594695)
chr8 (94-144)||(37562061-37562111)
chr8 (106-143)||(154392-154429)
chr8 (94-143)||(41304902-41304951)
[»] chr5 (12 HSPs)
chr5 (92-143)||(34952323-34952374)
chr5 (94-144)||(3722996-3723046)
chr5 (94-142)||(20125493-20125541)
chr5 (94-134)||(8725336-8725376)
chr5 (92-144)||(14914471-14914523)
chr5 (92-143)||(39840621-39840672)
chr5 (92-143)||(42807410-42807461)
chr5 (102-144)||(19271960-19272002)
chr5 (97-143)||(27340971-27341017)
chr5 (94-139)||(3155108-3155153)
chr5 (94-139)||(18638761-18638806)
chr5 (94-143)||(30301312-30301361)
[»] chr6 (9 HSPs)
chr6 (94-144)||(30622125-30622175)
chr6 (94-144)||(7693416-7693466)
chr6 (94-143)||(3800696-3800745)
chr6 (86-143)||(2333477-2333534)
chr6 (94-143)||(9200212-9200261)
chr6 (86-143)||(14569269-14569326)
chr6 (92-144)||(12499945-12499997)
chr6 (92-144)||(12507274-12507326)
chr6 (92-144)||(12508904-12508956)
[»] chr3 (13 HSPs)
chr3 (92-139)||(55196439-55196486)
chr3 (94-144)||(2812382-2812432)
chr3 (106-144)||(28884581-28884619)
chr3 (106-144)||(32795937-32795975)
chr3 (94-143)||(622379-622428)
chr3 (106-143)||(3484859-3484896)
chr3 (94-143)||(11574656-11574705)
chr3 (94-143)||(12094310-12094359)
chr3 (94-143)||(37323769-37323818)
chr3 (110-143)||(43460490-43460523)
chr3 (106-143)||(44910806-44910843)
chr3 (106-143)||(44972835-44972872)
chr3 (19-75)||(34295618-34295674)
[»] chr2 (12 HSPs)
chr2 (92-143)||(31009669-31009720)
chr2 (94-144)||(36909763-36909813)
chr2 (94-143)||(7687854-7687903)
chr2 (92-144)||(5962739-5962791)
chr2 (91-143)||(40496452-40496504)
chr2 (106-141)||(25994205-25994240)
chr2 (94-132)||(2308244-2308282)
chr2 (97-143)||(29582303-29582349)
chr2 (94-143)||(546305-546354)
chr2 (94-143)||(17267579-17267628)
chr2 (115-144)||(22353116-22353145)
chr2 (94-139)||(36795836-36795881)
[»] scaffold0194 (1 HSPs)
scaffold0194 (94-144)||(29730-29780)
[»] scaffold0020 (1 HSPs)
scaffold0020 (94-143)||(156008-156057)
[»] scaffold0057 (1 HSPs)
scaffold0057 (94-142)||(21494-21542)
[»] scaffold0024 (1 HSPs)
scaffold0024 (97-143)||(60569-60615)
[»] scaffold0111 (1 HSPs)
scaffold0111 (94-143)||(36788-36837)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 17500848 - 17500798
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17500848 aactttgatgataactttcattttctctcttcttattggtccaaaacaatg 17500798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 17552366 - 17552416
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17552366 aactttgatgataactttcattttctctcttcttattggtccaaaacaatg 17552416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 47644862 - 47644811
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||    
T  47644862 ataactttgatgacaactttcatttgctctcttctcattggtccaaaacaat 47644811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 27070589 - 27070638
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  27070589 aactttgatgacaactctcattttctctcttctcattggtccaaaacaat 27070638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 27207724 - 27207675
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  27207724 aactttgatgacaactctcattttctctcttctcattggtccaaaacaat 27207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 49089084 - 49089129
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaa 139  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  49089084 aactttgatgacaactttcattttctctcttctcattggtccaaaa 49089129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 30391297 - 30391248
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||||| |||| ||||||||| ||||||| ||||||||    
T  30391297 aactttgatgacaacttttatttactctcttctcattggtccaaaacaat 30391248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 31467747 - 31467706
Alignment:
Q  102 tgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||||||||||||||| |||||||||||  ||||||||    
T  31467747 tgataactttcattttctcttttcttattggttaaaaacaat 31467706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 52417682 - 52417632
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52417682 aactttgatgataactttcattttctctcttcttattggtccaaaacaatg 52417632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 30530319 - 30530369
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  30530319 aactttgatgacaactttcattttctctcttcttattggtccaaaacaatg 30530369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 51250203 - 51250260
Alignment:
Q  86 tttgaaataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||||    
T  51250203 tttgaaataactttgatgacaacttttattttctctcttcttattgatctaaaacaat 51250260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 34002240 - 34002290
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  34002240 aactttgatcacaactttcattttctctcttcttattggtccaaaacaatg 34002290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 45470759 - 45470809
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  45470759 aactttgatcacaactttcattttctctcttcttattggtccaaaacaatg 45470809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 5959535 - 5959489
Alignment:
Q  98 ttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||    
T  5959535 ttgatgacaactttgattttctctcttcttattggtcaaaaacaatg 5959489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 8464433 - 8464483
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  8464433 aactttgatgacaactttcattttctctctttttattggtccaaaataatg 8464483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 4154733 - 4154684
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||| ||||||||||| |||| ||||||||||||||||| ||||||||    
T  4154733 aactttaatgataacttttatttactctcttcttattggtccaaaacaat 4154684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 52078572 - 52078539
Alignment:
Q  94 aactttgatgataactttcattttctctcttctt 127  Q
    ||||||||||||||||||||||||||||||||||    
T  52078572 aactttgatgataactttcattttctctcttctt 52078539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 7371876 - 7371918
Alignment:
Q  102 tgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||  ||||||||||||||||||||| |||||||||    
T  7371876 tgataactttgtttttctctcttcttattggtcaaaaacaatg 7371918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 19920913 - 19920863
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||| ||| ||||||  ||||||||||||||||||||| |||||||||    
T  19920913 aactttggtgacaactttgtttttctctcttcttattggtcaaaaacaatg 19920863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 40139261 - 40139215
Alignment:
Q  97 tttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||| ||||||||||||||||||||| ||| ||| ||||||||    
T  40139261 tttgatgacaactttcattttctctcttctcatttgtccaaaacaat 40139215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 4511697 - 4511746
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||| ||||| |||||||||||| |||||||| ||||||| ||||||||    
T  4511697 aacttagatgacaactttcattttttctcttctcattggtccaaaacaat 4511746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 5315362 - 5315313
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||||||  ||||||||||||||| |||||||||||  ||||||||    
T  5315362 aactttgatgacgactttcattttctcttttcttattggttcaaaacaat 5315313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 33422139 - 33422188
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| |||||| |||||||||||||| ||||||| ||||||||    
T  33422139 aactttgttgacaacttttattttctctcttctcattggtccaaaacaat 33422188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 33669743 - 33669792
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||| ||||||| |||||||| ||||||| ||||||||    
T  33669743 aactttgatgacaactctcattttttctcttctcattggtccaaaacaat 33669792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 44112605 - 44112556
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| |||||| |||||||||||||| ||||||| ||||||||    
T  44112605 aactttgttgacaacttttattttctctcttctcattggtccaaaacaat 44112556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 50017343 - 50017392
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| |||||||||||| |||||||||| | ||||||| ||||||||    
T  50017343 aactttgttgataactttcaatttctctcttttcattggtccaaaacaat 50017392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 52369031 - 52369080
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| ||||||||||| |||| |||| ||||||| ||||||||    
T  52369031 aactttgatgacaactttcatttgctctattctcattggtccaaaacaat 52369080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 12271123 - 12271179
Alignment:
Q  19 atgttgatagtagttgtcttggctccccgacaagagctggctacggtggaattttaa 75  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||    
T  12271123 atgttgatggtagttgtcttggctccccgacaagagctggctacgatgaaattttaa 12271179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 34114037 - 34114086
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  34114037 aactttgatggtaactttcattttctctcttcttattggtccaaaacaat 34114086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 13267398 - 13267448
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| ||||||  ||||||||||||||||||||| |||||||||    
T  13267398 aactttgatgaaaactttgtttttctctcttcttattggtcaaaaacaatg 13267448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 31147382 - 31147332
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||| ||||| |||||| |||||||||||||||||||||| |||||||||    
T  31147382 aacttcgatgacaacttttattttctctcttcttattggtccaaaacaatg 31147332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 46912731 - 46912769
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  46912731 aactttcattttctctcttcttattggtccaaaacaatg 46912769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 4514185 - 4514234
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| || |||||||||||||||||| ||||||| ||||||||    
T  4514185 aactttgatgacaattttcattttctctcttctcattggtccaaaacaat 4514234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 10096662 - 10096711
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||    
T  10096662 aactttgatgacaactttcatttgctctcttctcattggtccaaaacaat 10096711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 11012276 - 11012227
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||||||||||||||| ||||||||||||  |||||||    
T  11012276 aactttgatgacaactttcattttctcttttcttattggtccgaaacaat 11012227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 40335928 - 40335879
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||||||||||||||||| || ||||||| ||||||||    
T  40335928 aactttgatgacaactttcattttctctctcctcattggtctaaaacaat 40335879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 32365585 - 32365637
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||||||| ||  ||||||||||| ||||||||| |||||||||    
T  32365585 ataactttgatgataacattatttttctctctttttattggtcaaaaacaatg 32365637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 29949596 - 29949642
Alignment:
Q  97 tttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||| ||||||| ||||||||||||||||||||  ||||||||    
T  29949596 tttgatgacaactttctttttctctcttcttattggtaaaaaacaat 29949642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 17363381 - 17363332
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| ||||||||||| ||||||| | ||||||| ||||||||    
T  17363381 aactttgatgacaactttcatttgctctcttttcattggtccaaaacaat 17363332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 33438188 - 33438147
Alignment:
Q  102 tgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||    
T  33438188 tgataaccttcattttctctctttttattggtcaaaaacaat 33438147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 44133682 - 44133633
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||| ||||||||||| |||| |||||||| |||||||| ||||||||    
T  44133682 aactttaatgataacttttatttactctcttcctattggtccaaaacaat 44133633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 31804251 - 31804291
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtc 134  Q
    ||||||||||| |||||||||||||| ||||| ||||||||    
T  31804251 aactttgatgacaactttcattttctttcttcctattggtc 31804291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 41495166 - 41495114
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    |||| |||| ||| ||||||  ||||||||||||||||||||| |||||||||    
T  41495166 ataattttggtgacaactttgtttttctctcttcttattggtcaaaaacaatg 41495114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 5642302 - 5642360
Alignment:
Q  86 tttgaaataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  5642302 tttgagataactttgatgacaacttttattttctctcttcttattggtccaaaacaatg 5642360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 5644243 - 5644301
Alignment:
Q  86 tttgaaataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  5644243 tttgagataactttgatgacaacttttattttctctcttcttattggtccaaaacaatg 5644301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 8074645 - 8074694
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  8074645 aactttgatgacaactttcattttctctcttcttattggttcaaaacaat 8074694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 324000 - 324049
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||||| |||| ||||||||||||||||| ||||||||    
T  324000 aactttgatgacaacttttatttactctcttcttattggtccaaaacaat 324049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 7129684 - 7129636
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaa 142  Q
    ||||||||||| ||||||  ||||||||||||||||||||| |||||||    
T  7129684 aactttgatgacaactttgtttttctctcttcttattggtcaaaaacaa 7129636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 35594695 - 35594655
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtc 134  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  35594695 aactttgatgacaactttcattttctctctttttattggtc 35594655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 37562061 - 37562111
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| ||| ||  ||||||||||||||||||||| |||||||||    
T  37562061 aactttgatgacaaccttgtttttctctcttcttattggtcaaaaacaatg 37562111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 154429 - 154392
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  154429 aactttcattttctctctttttattggtcaaaaacaat 154392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 41304902 - 41304951
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| |||||| |||||||||||||| ||||||| ||||||||    
T  41304902 aactttgttgacaacttttattttctctcttctcattggtccaaaacaat 41304951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 34952323 - 34952374
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  34952323 ataactttgatgacaacttttattttctctcttcttattggtccaaaacaat 34952374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 3722996 - 3723046
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  3722996 aactttgatgacaactttcattttctctctttttattggtccaaaacaatg 3723046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 20125541 - 20125493
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaa 142  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  20125541 aactttgatgacaactttcattttctctcttctcattggtcaaaaacaa 20125493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 8725336 - 8725376
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtc 134  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  8725336 aactttgatgacaactttcattttctcttttcttattggtc 8725376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 14914523 - 14914471
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||| ||||||  |||| |||||||||||||||| |||||||||    
T  14914523 ataactttgatgacaactttgtttttatctcttcttattggtcaaaaacaatg 14914471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 39840621 - 39840672
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||||| |||||| |||||| ||||||| ||||||| ||||||||    
T  39840621 ataactttgatgacaacttttattttccctcttctcattggtccaaaacaat 39840672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 42807461 - 42807410
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||| |||||||| |||||| |||||||||||| ||||||||| ||||||||    
T  42807461 ataattttgatgacaacttttattttctctctttttattggtccaaaacaat 42807410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 19272002 - 19271960
Alignment:
Q  102 tgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||  ||||||||||||||||||||| |||||||||    
T  19272002 tgataactttgtttttctctcttcttattggtcaaaaacaatg 19271960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 27341017 - 27340971
Alignment:
Q  97 tttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||| ||||||||||| ||||||| ||||||||| ||||||||    
T  27341017 tttgatgacaactttcatttgctctctttttattggtccaaaacaat 27340971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 3155153 - 3155108
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaa 139  Q
    |||||| |||| |||||||||||||||| |||||||||||| ||||    
T  3155153 aactttaatgacaactttcattttctctattcttattggtccaaaa 3155108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 18638761 - 18638806
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaa 139  Q
    ||||||||||| |||||| ||||||||| |||||||||||| ||||    
T  18638761 aactttgatgacaacttttattttctcttttcttattggtccaaaa 18638806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 30301361 - 30301312
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| ||||||||||| ||||||||| ||| ||| ||||||||    
T  30301361 aactttgatgacaactttcatttcctctcttctcatttgtccaaaacaat 30301312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 30622175 - 30622125
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  30622175 aactttgatgacaactttcattttttctcttcttattggtccaaaacaatg 30622125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 7693466 - 7693416
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| || ||| |||||||||||||||||||||| |||||||||    
T  7693466 aactttgatgacaatttttattttctctcttcttattggtccaaaacaatg 7693416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 3800745 - 3800696
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| ||||||||||||||||||||| ||||||| ||||||||    
T  3800745 aactttgttgacaactttcattttctctcttctcattggtccaaaacaat 3800696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 2333534 - 2333477
Alignment:
Q  86 tttgaaataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| || |||||||| || ||| |||||||||||||||||| ||| ||||||||    
T  2333534 tttgaaacaattttgatgacaatttttattttctctcttcttattagtccaaaacaat 2333477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 9200261 - 9200212
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||||| |||| |||||||| |||||||| ||||||||    
T  9200261 aactttgatgacaacttttatttactctcttcctattggtccaaaacaat 9200212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 14569326 - 14569269
Alignment:
Q  86 tttgaaataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||| |||||||||||||||| ||| ||| |||||||| | ||||||| ||||||||    
T  14569326 tttgagataactttgatgataaattttattatctctcttttcattggtccaaaacaat 14569269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 12499945 - 12499997
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    |||| ||||||||||| |||  ||||||||||||||||| ||| |||||||||    
T  12499945 ataattttgatgataattttgtttttctctcttcttattcgtcaaaaacaatg 12499997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 12507274 - 12507326
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    |||| ||||||||||| |||  ||||||||||||||||| ||| |||||||||    
T  12507274 ataattttgatgataattttgtttttctctcttcttattcgtcaaaaacaatg 12507326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 12508956 - 12508904
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    |||| ||||||||||| |||  ||||||||||||||||| ||| |||||||||    
T  12508956 ataattttgatgataattttgtttttctctcttcttattcgtcaaaaacaatg 12508904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 55196439 - 55196486
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaa 139  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  55196439 ataactttgatgataactttcattttctctctttttattagtccaaaa 55196486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 2812432 - 2812382
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    |||||| ||||||| ||||||||||| |||||||||||||| |||||||||    
T  2812432 aactttaatgataattttcattttctttcttcttattggtccaaaacaatg 2812382  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 28884619 - 28884581
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  28884619 aactttgattttctctcttcttattggtcaaaaacaatg 28884581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 32795975 - 32795937
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  32795975 aactttcattttctctctttttattggtcaaaaacaatg 32795937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 622379 - 622428
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| |||||| |||||||||||||| ||||||| ||||||||    
T  622379 aactttgttgacaacttttattttctctcttctcattggtccaaaacaat 622428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 3484896 - 3484859
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  3484896 aactttcattttctctcttctcattggtccaaaacaat 3484859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 11574705 - 11574656
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| ||| || |||||||||||||||||||||| ||||||||    
T  11574705 aactttggtgacaaccttaattttctctcttcttattggtcaaaaacaat 11574656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 12094310 - 12094359
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |  |||||||| ||||||||||||||||| ||||||||    
T  12094310 aactttgatgacacatttcatttgctctcttcttattggtctaaaacaat 12094359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 37323818 - 37323769
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| || |||||||||||| ||||||||||||| ||| ||||    
T  37323818 aactttgatgacaattttcattttctcccttcttattggtccaaaccaat 37323769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 43460523 - 43460490
Alignment:
Q  110 ttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||||||||||||||||| ||||||||    
T  43460523 ttcattttctctcttcttattggtcaaaaacaat 43460490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 44910843 - 44910806
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  44910843 aacttacattttctctcttcttattggtcaaaaacaat 44910806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 44972872 - 44972835
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  44972872 aactttcattttctcttttcttattggtccaaaacaat 44972835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 34295674 - 34295618
Alignment:
Q  19 atgttgatagtagttgtcttggctccccgacaagagctggctacggtggaattttaa 75  Q
    |||||||| | | |||||||| |||||  |||||||||||||| |||||||||||||    
T  34295674 atgttgatggcaattgtcttgactcccaaacaagagctggctatggtggaattttaa 34295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 31009720 - 31009669
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||| | ||||||||||||||||||||||||||||| || ||||||||    
T  31009720 ataacttttaagataactttcattttctctcttcttattgatcaaaaacaat 31009669  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 36909763 - 36909813
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| ||||||  ||||||||||||||||||||| |||||||||    
T  36909763 aactttgatgacaactttgtttttctctcttcttattggtcaaaaacaatg 36909813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 7687903 - 7687854
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| |||||||||| |||||||||||||| ||||||| ||||||||    
T  7687903 aactttgttgataacttttattttctctcttctcattggtctaaaacaat 7687854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 5962791 - 5962739
Alignment:
Q  92 ataactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    |||| |||| ||||||||||  ||||||||||||||||||||| |||||||||    
T  5962791 ataattttggtgataactttgtttttctctcttcttattggtcaaaaacaatg 5962739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 40496504 - 40496452
Alignment:
Q  91 aataactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||||||||| |||||| |||| |||||||| |||||||| ||||||||    
T  40496504 aataactttgatgacaacttttatttactctcttcctattggtccaaaacaat 40496452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 25994240 - 25994205
Alignment:
Q  106 aactttcattttctctcttcttattggtcgaaaaca 141  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25994240 aactttcattttctctcttcttattggtccaaaaca 25994205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 2308244 - 2308282
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattgg 132  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  2308244 aactttgatgacaactttcattttctctcttctcattgg 2308282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 29582303 - 29582349
Alignment:
Q  97 tttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||| ||||||| ||||||||||||||||||||  ||||||||    
T  29582303 tttgatgacaactttctttttctctcttcttattggtaaaaaacaat 29582349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 546305 - 546354
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| |||||| |||||||||||||| ||||||| ||||||||    
T  546305 aactttgttgacaacttttattttctctcttctcattggtccaaaacaat 546354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 17267579 - 17267628
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||| |||||||| |||||||||||| || ||||||||| ||||||||    
T  17267579 aacttttatgataacattcattttctctatttttattggtcaaaaacaat 17267628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 22353116 - 22353145
Alignment:
Q  115 tttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||||||||||||||||||||||    
T  22353116 tttctctcttcttattggtcgaaaacaatg 22353145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 36795881 - 36795836
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaa 139  Q
    ||||||||||||| |||||||||||||| || ||||||||| ||||    
T  36795881 aactttgatgatagctttcattttctctttttttattggtcaaaaa 36795836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 29730 - 29780
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaatg 144  Q
    ||||||||||| ||||||||||||||||||| | ||||||| |||||||||    
T  29730 aactttgatgacaactttcattttctctcttttcattggtccaaaacaatg 29780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 156057 - 156008
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  156057 aactttgatgacaactctcattttctctcttctcattggtccaaaacaat 156008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 21494 - 21542
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaa 142  Q
    ||||||||| | ||||||||||||||||||||| ||||||| |||||||    
T  21494 aactttgataacaactttcattttctctcttctcattggtccaaaacaa 21542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 60615 - 60569
Alignment:
Q  97 tttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    |||||||| ||||||||||||||||||| | ||||||| ||||||||    
T  60615 tttgatgacaactttcattttctctcttttcattggtccaaaacaat 60569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 36788 - 36837
Alignment:
Q  94 aactttgatgataactttcattttctctcttcttattggtcgaaaacaat 143  Q
    ||||||| ||| |||||| |||||||||||||| ||||||| ||||||||    
T  36788 aactttgttgacaacttttattttctctcttctcattggtccaaaacaat 36837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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