View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19042_low_17 (Length: 205)
Name: NF19042_low_17
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19042_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 33987066 - 33987167
Alignment:
| Q |
93 |
aactttacatacaagtaataatatccaccagttctacttcttggcctctagagaagaacatccttgtttccaattcagaagaggtattatttcctttgct |
192 |
Q |
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| T |
33987066 |
aactttaaatacaagtaataatatccaccagttctacttcttggcctctagagaagaacatccttgtttccaattcagaagaggtattatttcctttgct |
33987165 |
T |
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| Q |
193 |
tc |
194 |
Q |
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|| |
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| T |
33987166 |
tc |
33987167 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 33986982 - 33987035
Alignment:
| Q |
17 |
atatattaggatatgatcttttatttattctaggatcaaaaggcctctaaatga |
70 |
Q |
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| T |
33986982 |
atatattaggatatgatcttttatttattctaggatcaaaaggcctctaaatga |
33987035 |
T |
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