View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19042_low_4 (Length: 403)
Name: NF19042_low_4
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19042_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 48085571 - 48085214
Alignment:
| Q |
11 |
cacagaaagaaatgtttgcactaggattgaatcaaaggaagacattttattactgacaatttgagtgggaaaaccagtactcaagaacttggcatgacaa |
110 |
Q |
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| T |
48085571 |
cacagaaagaaatgtttgcactaggattgaaacaaaggaagacattttattactgacaatttgagtgggaaaaccagtactcaagaacttggcatgacaa |
48085472 |
T |
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| Q |
111 |
accactagctatggaatacaaaacaaaagattaatggataaattaaagggacacagataaagaaaatacacacataaactaacnnnnnnncattaaccaa |
210 |
Q |
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| T |
48085471 |
accactagctatggaatacaaaacaaaag--------------------gacacagataaagaaaatacacacataaactaacaaaaaaacattaaccaa |
48085392 |
T |
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| Q |
211 |
atgtcttggatggattgatcaagtcctggaatctaaggccatgatagtgctgagattcatgggatacatgtactgagcactgcccctaaggatttggttg |
310 |
Q |
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| T |
48085391 |
atgtcttggatggattgatcaagtcctggaatctaaggccatgatagtgctgagattcatgggatacatgtactgagcactgcccctaaggattcggttg |
48085292 |
T |
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| Q |
311 |
actatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagttt |
388 |
Q |
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| T |
48085291 |
actatgattttgtttgccttttcagatggatggaatgcatcccaaaaagcattaagttctctgtttgggcacaagttt |
48085214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 48102536 - 48102491
Alignment:
| Q |
317 |
attttgtttgccttttcagatggatggaatgcatcccaaaatgcat |
362 |
Q |
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| T |
48102536 |
attttgtttgccttttcagatggatggaatgcatcccaaaatgcat |
48102491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 1809590 - 1809526
Alignment:
| Q |
323 |
tttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt |
387 |
Q |
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| T |
1809590 |
tttgccttttcagatggatggaatggatcccaaaatacatacaagtctctgttagggcacaagtt |
1809526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 7385568 - 7385635
Alignment:
| Q |
320 |
ttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt |
387 |
Q |
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| T |
7385568 |
ttgtttgccttttcagatggatggaatgcatcccaaaatgcatttaagtctctatttgagcacaagtt |
7385635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 35376267 - 35376344
Alignment:
| Q |
311 |
actatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagttt |
388 |
Q |
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||||||||| || | || ||||||||||||||||||| |||||||||||||| ||| |||| ||| ||||||||||| |
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| T |
35376267 |
actatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcacaagttt |
35376344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 35357711 - 35357785
Alignment:
| Q |
310 |
gactatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaa |
384 |
Q |
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|||||||||| || | || |||||||||||||| ||||||||||||||||||| ||| | || ||||||||||| |
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| T |
35357711 |
gactatgattctgctagctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaa |
35357785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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