View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19042_low_9 (Length: 276)
Name: NF19042_low_9
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19042_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 12181803 - 12181555
Alignment:
| Q |
10 |
attatactttcattttcatatcttgaattatacttttcattccttctattgtaactatgttaaaacctataacaaacctataatacattgagaagtaann |
109 |
Q |
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| T |
12181803 |
attatactttcattttcatatcttgaattatacttttcattccttctattgtaactatgttaaaacctataa-----------tacattgagaagtaaat |
12181715 |
T |
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| Q |
110 |
nnnnnnnnnnnnnnntttaatagggcgcatataatatggaattgatccaaatgtaaataatatgttac--------ccatggagaatgactttgaacaat |
201 |
Q |
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| T |
12181714 |
atatattatatatattttaatagggcgcatataatatggaattggtccaaatgtaaataatatgttacattgttacccatggagaatgactttgagcaat |
12181615 |
T |
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| Q |
202 |
cgtttaaaaatttgttttactttgtacaactttcattgtcgcttgttaataataactttt |
261 |
Q |
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| T |
12181614 |
cgtttaaaaatttgttttactttgtacaactttcattgtcacttgttaataataattttt |
12181555 |
T |
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