View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19043_high_16 (Length: 251)

Name: NF19043_high_16
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19043_high_16
NF19043_high_16
[»] chr1 (6 HSPs)
chr1 (22-241)||(9672215-9672435)
chr1 (122-238)||(5882621-5882737)
chr1 (55-231)||(24892111-24892284)
chr1 (124-197)||(23688550-23688623)
chr1 (142-233)||(50262385-50262476)
chr1 (166-230)||(27564957-27565021)
[»] chr6 (8 HSPs)
chr6 (122-233)||(28847865-28847977)
chr6 (48-238)||(26497947-26498139)
chr6 (122-238)||(7200995-7201111)
chr6 (144-230)||(3361838-3361924)
chr6 (48-233)||(609716-609901)
chr6 (134-233)||(10669866-10669965)
chr6 (144-231)||(33986434-33986521)
chr6 (144-231)||(29288520-29288606)
[»] chr4 (6 HSPs)
chr4 (122-231)||(16061554-16061662)
chr4 (122-238)||(38138649-38138765)
chr4 (49-224)||(36441186-36441361)
chr4 (128-215)||(42522696-42522785)
chr4 (42-95)||(16061673-16061726)
chr4 (173-231)||(6166333-6166391)
[»] chr7 (10 HSPs)
chr7 (126-238)||(38190360-38190472)
chr7 (123-238)||(33540188-33540304)
chr7 (145-238)||(22317775-22317868)
chr7 (147-238)||(27224375-27224466)
chr7 (147-233)||(44767420-44767506)
chr7 (159-229)||(19468426-19468496)
chr7 (122-197)||(40230811-40230886)
chr7 (55-104)||(38190496-38190545)
chr7 (49-111)||(33540318-33540380)
chr7 (45-108)||(22317905-22317969)
[»] chr2 (3 HSPs)
chr2 (60-231)||(2103912-2104083)
chr2 (122-238)||(44259917-44260033)
chr2 (126-208)||(30706939-30707021)
[»] chr8 (8 HSPs)
chr8 (47-231)||(24534709-24534894)
chr8 (122-238)||(33474496-33474612)
chr8 (124-231)||(9946605-9946712)
chr8 (122-209)||(6976680-6976767)
chr8 (122-196)||(44004459-44004533)
chr8 (129-209)||(21467016-21467096)
chr8 (150-233)||(13569341-13569426)
chr8 (50-111)||(9946530-9946591)
[»] chr5 (5 HSPs)
chr5 (122-230)||(6967399-6967508)
chr5 (122-238)||(22867923-22868042)
chr5 (145-233)||(11245296-11245385)
chr5 (122-233)||(27246115-27246218)
chr5 (156-232)||(18673793-18673869)
[»] scaffold0005 (1 HSPs)
scaffold0005 (122-198)||(284385-284460)
[»] chr3 (1 HSPs)
chr3 (122-218)||(42624647-42624741)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 9672215 - 9672435
Alignment:
Q  22 aaatgtttgaacatgacaccttaatacagggctgttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggccttnnnnnnnnn 121  Q
    ||||||||||||||  |||||||||||||||| ||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||              
T  9672215 aaatgtttgaacatagcaccttaatacagggccgtt-tttagggagtgtaaagagttcaaccgagcagggcctcctaaagtgacgggcctcaagaaaaaa 9672313  T
Q  122 -ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagt-aaaaaatcatgttccatgcttttatttt 219  Q
     ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9672314 attattgctcaatatccccatccccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaaatcatgttccatgcttttatttt 9672413  T
Q  220 taagttaaaaaacaggtctctg 241  Q
    ||||||||||||||||||||||    
T  9672414 taagttaaaaaacaggtctctg 9672435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 5882737 - 5882621
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttta 221  Q
    ||||||||||| ||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||    
T  5882737 ttattgctcaatatccccacccccactcaaaaaagaaaagtaaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgtttcaatttcta 5882638  T
Q  222 agttaaaaaacaggtct 238  Q
    |||||||||||| ||||    
T  5882637 agttaaaaaacacgtct 5882621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 24892284 - 24892111
Alignment:
Q  55 gttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggccttnnnnnnnnnttattgctcaacatccccatcaccactcaaaaa 154  Q
    ||||||| |||||||||||||||||||| |||| |||||| ||||||||| | || |           |||||||||| ||||||| | |||||||||||    
T  24892284 gttctttggggagtgcaaagagctcaaccgagctgggccttctaaagtgatgagcttcaaaaaaaaaatattgctcaatatccccacccccactcaaaaa 24892185  T
Q  155 ggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaa 231  Q
    | ||||||||||||  |||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  24892184 g-aaaaataaacat--ttcatgtttcaatttctaagtaaaaaatcaggttccatgtttctatttctaagttaaaaaa 24892111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 23688623 - 23688550
Alignment:
Q  124 attgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaa 197  Q
    ||||||||| ||||||| | ||| ||| ||| |||||||||  |||||||||||||||||||||||||||||||    
T  23688623 attgctcaatatccccacctccattcagaaaagaaaaataagtatgtttcatgtttcaatttctaagtaaaaaa 23688550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 50262385 - 50262476
Alignment:
Q  142 caccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaaca 233  Q
    |||||||||||||  |  || |||||||||| || |||| |||||||||||||||| |||||| |||| || ||||| ||||| ||||||||    
T  50262385 caccactcaaaaaaaatgaaaaaacatgttttatatttctatttctaagtaaaaaaacatgtttcatgtttctatttctaagtaaaaaaaca 50262476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 27564957 - 27565021
Alignment:
Q  166 catgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaa 230  Q
    |||||| |||||||| |||| ||||||||||| ||||||| ||| || ||||||||||| |||||    
T  27564957 catgttccatgtttctatttttaagtaaaaaaacatgttctatgtttctatttttaagtaaaaaa 27565021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 28847977 - 28847865
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaa-aaaatcatgttccatgcttttattttt 220  Q
    ||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||      
T  28847977 ttattgctcaacatccccacccccactctaaaaagaaaaataaacatgtttcatgtttcaatttctaagtaaaaaaatcatgttccatgtttttatttca 28847878  T
Q  221 aagttaaaaaaca 233  Q
    |||||||||||||    
T  28847877 aagttaaaaaaca 28847865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 26498139 - 26497947
Alignment:
Q  48 cagggctgttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggccttnnnnnnnnn-ttattgctcaacatccccatcacca 146  Q
    |||||| ||||||||||||||||||||| ||||| ||||| |||| ||  ||||||| ||||||           ||||||||||| ||||||| | |||    
T  26498139 cagggccgttctttagggagtgcaaagatctcaattgagctgggcttctcaaagtgatgggcctcaagaaaaaaattattgctcaatatccccaccccca 26498040  T
Q  147 ctcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagt-aaaaaatcatgttccatgcttttatttttaagttaaaaaacaggtct 238  Q
    || ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||| |||||||||||||| ||||    
T  26498039 ctgaaaaaagaaaaataaacatgtttcatgtttcaatttctaaataaaaaaatcatgttccatgtttctatttctaagttaaaaaacacgtct 26497947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 7200995 - 7201111
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttta 221  Q
    ||||||||||| ||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||| ||    
T  7200995 ttattgctcaatatctccacccccactcaaaaaagaaaaataaacatgtttcatgtttcaatttctaagtcaaaaatcatgtttcatgtttctatttcta 7201094  T
Q  222 agttaaaaaacaggtct 238  Q
    |||||||||||| ||||    
T  7201095 agttaaaaaacacgtct 7201111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 3361838 - 3361924
Alignment:
Q  144 ccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaa 230  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  3361838 ccactcaaaaaagaaaaataaatatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgtttctatttctaagttaaaaa 3361924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 609901 - 609716
Alignment:
Q  48 cagggctgttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggccttnnnnnnnnnttattgctcaacatccccatcaccac 147  Q
    |||||| ||||||| || ||||||||||||||||| |||| |||||||| ||||||  ||||||          ||||  ||||| ||||||| | ||||    
T  609901 cagggccgttctttgggaagtgcaaagagctcaaccgagctgggcctcccaaagtggtgggcct-aaaaaaaaattataactcaatatccccacccccac 609803  T
Q  148 tcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaa-aaaatcatgttccatgcttttatttttaagttaaaaaaca 233  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |||||  |||||||||||||    
T  609802 tcaaaaaagaaaaataaacatgtttcatgtttcaatttataagtaaaaaaatcatgtttcatgtttctatttccaagttaaaaaaca 609716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 10669866 - 10669965
Alignment:
Q  134 atccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaaca 233  Q
    ||||||| | ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||| ||||||||||    
T  10669866 atccccacctccactcaaaaaagaaaaataaatatgtttcatgttttaatttctaagtaaaaaatcatgttccatgtttctatttctaaattaaaaaaca 10669965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 33986434 - 33986521
Alignment:
Q  144 ccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaa 231  Q
    |||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||    
T  33986434 ccactcaacaaagaaaaataaacatatttcatgtttcaatttctaagtaaaaaattatgctccatgtttttatttctaagttaaaaaa 33986521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 29288606 - 29288520
Alignment:
Q  144 ccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaa 231  Q
    ||||||||||| |||||| |||||||||||||||| | |||||||||||||||  ||||||||||| || ||||| ||| | ||||||    
T  29288606 ccactcaaaaaagaaaaa-aaacatgtttcatgttactatttctaagtaaaaacacatgttccatgtttctatttctaaataaaaaaa 29288520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 16061662 - 16061554
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttta 221  Q
    ||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||    
T  16061662 ttattgctcaatatccccacccccactcaaaaag-aaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcaggttccatgtttctatttcta 16061564  T
Q  222 agttaaaaaa 231  Q
    ||||||||||    
T  16061563 agttaaaaaa 16061554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 38138649 - 38138765
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttta 221  Q
    ||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || |||| || | ||| ||    
T  38138649 ttattgctcaatatccccacccccactcaaaaaagaaaaataaacatgtttcatgattcaatttctaagtaaaaaatcatatttcatgtttctttttcta 38138748  T
Q  222 agttaaaaaacaggtct 238  Q
    |||||| ||||| ||||    
T  38138749 agttaagaaacatgtct 38138765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 36441361 - 36441186
Alignment:
Q  49 agggctgttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggccttnnnnnnnnn-ttattgctcaacatccccatcaccac 147  Q
    |||||||||| || |||||||||||||||||||| |||| ||| |||| ||||||| ||||||           |||||| |||| |||| || | ||||    
T  36441361 agggctgttccttggggagtgcaaagagctcaaccgagctgggtctcccaaagtgatgggcctcaagaaaaaaattattgttcaatatccacacccccac 36441262  T
Q  148 tcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagt 224  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| || |||||| ||||    
T  36441261 tcaaaaaagaaaaataaacatgtttcatgtttcaatttccaagt-aaaaatcatgttctatgtttctattttcaagt 36441186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 42522785 - 42522696
Alignment:
Q  128 ctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagt--aaaaaatcatgttccatgctttta 215  Q
    ||||| ||||||| | | ||||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||| |||| |||||    
T  42522785 ctcaatatccccacctctactcaaaaaagaaaaataaatatgtttcatatttcaatttctaaataaaaaaaatcatgttgcatgttttta 42522696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 16061726 - 16061673
Alignment:
Q  42 ttaatacagggctgttctttagggagtgcaaagagctcaactgagcagggcctc 95  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  16061726 ttaattcagggccgttctttggggagtgcaaagagctcaactgagctgggcctc 16061673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 6166333 - 6166391
Alignment:
Q  173 catgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaa 231  Q
    |||||||||||||||| ||||||||||||||| |||  || ||||| ||||||||||||    
T  6166333 catgtttcaatttctatgtaaaaaatcatgtttcatatttctatttctaagttaaaaaa 6166391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 38190472 - 38190360
Alignment:
Q  126 tgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagtt 225  Q
    ||||||| ||||||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  38190472 tgctcaatatccccacccccactcaaaaaaaaaaaaaaaacatgtttcatgtttcaatttctaagtaaaaaatcatgtttcatgtttttatttctaagtt 38190373  T
Q  226 aaaaaacaggtct 238  Q
    |||||||| ||||    
T  38190372 aaaaaacacgtct 38190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 33540304 - 33540188
Alignment:
Q  123 tattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaa-aaaatcatgttccatgcttttattttta 221  Q
    |||||||||| ||||||| | ||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||  |||| ||    
T  33540304 tattgctcaatatccccacccccactcagaaaagaaaaataaatatgtttcatgtttcaatttctaagtaaaaaaatcatgttccatgtttcaatttcta 33540205  T
Q  222 agttaaaaaacaggtct 238  Q
    |||||||||||||||||    
T  33540204 agttaaaaaacaggtct 33540188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 22317868 - 22317775
Alignment:
Q  145 cactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaacaggtct 238  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||| ||||    
T  22317868 cactcaaaaaagaaaaataaacatgttttatgtttcaatttctaagtaaaaaatcatgtttcatgtttctatttataagttaaaaaacacgtct 22317775  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 27224466 - 27224375
Alignment:
Q  147 ctcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaacaggtct 238  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||| ||||    
T  27224466 ctcaaaaaagaaaaataaacatgttttatgtttcaatttctaagtaaaaaatcatgttgcatgtttctatttctaagttaaaaaacatgtct 27224375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 44767506 - 44767420
Alignment:
Q  147 ctcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaaca 233  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| || ||||| ||||||||||||||    
T  44767506 ctcaaaaaagaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcacattccatgtttctatttctaagttaaaaaaca 44767420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 19468496 - 19468426
Alignment:
Q  159 aaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||||||||||    
T  19468496 aaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatatttctatttctaagttaaaa 19468426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 40230811 - 40230886
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaa 197  Q
    ||||||||||| ||||| | | ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  40230811 ttattgctcaatatccctacccccactcaaaaaagaaaaataaacatgtttcatgttttaatttctaagttaaaaa 40230886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 38190545 - 38190496
Alignment:
Q  55 gttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtga 104  Q
    ||||||| |||||||||||||||||||| |||| |||||||| |||||||    
T  38190545 gttctttggggagtgcaaagagctcaaccgagctgggcctcccaaagtga 38190496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 33540380 - 33540318
Alignment:
Q  49 agggctgttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggcct 111  Q
    ||||| ||| ||| ||||||||||||||||||||||||  |||| ||| ||||||| ||||||    
T  33540380 agggccgttttttggggagtgcaaagagctcaactgagttgggcatcccaaagtgatgggcct 33540318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 22317969 - 22317905
Alignment:
Q  45 atacagggctgttctttaggg-agtgcaaagagctcaactgagcagggcctcctaaagtgacggg 108  Q
    ||||| ||| ||||||||||| ||||||||||| ||||| |||| ||||||| |||||||| |||    
T  22317969 atacaaggccgttctttaggggagtgcaaagagttcaaccgagctgggcctcttaaagtgatggg 22317905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 2103912 - 2104083
Alignment:
Q  60 ttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggccttnnnnnnnnn-ttattgctcaacatccccatcaccactcaaaaaggaa 158  Q
    ||||||||||||||||||||||| |||| || ||||| ||||||| ||||||           ||||||||||| ||||||| | ||||||||||| |||    
T  2103912 ttagggagtgcaaagagctcaaccgagctggacctcccaaagtgatgggcctcaagaaaaaaattattgctcaatatccccacccccactcaaaaaagaa 2104011  T
Q  159 aaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaa 231  Q
    || |||||||||||||||||||||||||||||| |||||||||||| |||| || ||||| ||||||||||||    
T  2104012 aattaaacatgtttcatgtttcaatttctaagt-aaaaatcatgtttcatgtttatatttctaagttaaaaaa 2104083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 44260033 - 44259917
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttta 221  Q
    ||||||||||| ||||||| | |||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||  ||| || ||||| ||    
T  44260033 ttattgctcaatatccccacccccactcaaaaaaaaaaaataaaaatgtttcttgtttcaatttctaagtaaaaaatcatgttttatgtttctatttcta 44259934  T
Q  222 agttaaaaaacaggtct 238  Q
    |||| ||||||| ||||    
T  44259933 agtttaaaaacacgtct 44259917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 30706939 - 30707021
Alignment:
Q  126 tgctcaacatccccatcacca-ctcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccat 208  Q
    ||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30706939 tgctcaatatcccca-caccaactcaaaaaagaaaaataaacatgtttcatgtttcaatttttaagtaaaaaatcatgttccat 30707021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 24534709 - 24534894
Alignment:
Q  47 acagggctgttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggccttnnnnnnnnn-ttattgctcaacatccccatcacc 145  Q
    ||||||| ||||||| |||||||||| ||||||||  |||| |||||||| ||||||| ||||||           ||||||||||| || | |||| |     
T  24534709 acagggccgttctttggggagtgcaacgagctcaatcgagctgggcctcccaaagtgatgggcctcaagaaaaaaattattgctcaatattctcatccct 24534808  T
Q  146 actcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaa 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||| ||| ||||||||    
T  24534809 actcaaaaaagaaaaataaacatgtttcatgtttcaatttctaagtaaagaattatgttccatgtttctatttctaaattaaaaaa 24534894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 33474496 - 33474612
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttta 221  Q
    ||||||||||| ||| ||| | |||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| ||    
T  33474496 ttattgctcaatatctccacccccactcaaaaaaagaaaataaacatgtttcatgtttcaatttctaactaaaaaatcatgttccatgtttctatttcta 33474595  T
Q  222 agttaaaaaacaggtct 238  Q
    |||| ||||||| ||||    
T  33474596 agtttaaaaacacgtct 33474612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 9946605 - 9946712
Alignment:
Q  124 attgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagt-aaaaaatcatgttccatgcttttatttttaa 222  Q
    ||||||||| ||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||  ||||||| || |||||||||    
T  9946605 attgctcaatatccccacccccactcaaaaag-aaaactaaacatgtttcatgtttcaatttctaagtaaaaaaatcagattccatgtttctatttttaa 9946703  T
Q  223 gttaaaaaa 231  Q
    |||||||||    
T  9946704 gttaaaaaa 9946712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 6976767 - 6976680
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatg 209  Q
    |||||| |||| ||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  6976767 ttattgttcaatatccccatccccactcagaaaagaaaaataaacatatttcatgtttcaatttctaaataaaaaatcatgttccatg 6976680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 44004533 - 44004459
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaa 196  Q
    ||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44004533 ttattgctcaatatccccacccccactcaaaaaagaaaaataaacatgtttcatgtttcaatttctaagtaaaaa 44004459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 21467096 - 21467016
Alignment:
Q  129 tcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatg 209  Q
    |||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  21467096 tcaatatccccacccccactcaaaaaagaaaaataaacatgtttcatgtttcaatttctatgtaaaaaatcatgtttcatg 21467016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 13569426 - 13569341
Alignment:
Q  150 aaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttcc--atgcttttatttttaagttaaaaaaca 233  Q
    ||||| |||||||||| ||||||||||||| ||||| ||||||||||  ||||||||  ||| || ||||| ||||||||||||||    
T  13569426 aaaaaagaaaaataaatatgtttcatgttttaatttttaagtaaaaacccatgttccatatgtttctatttctaagttaaaaaaca 13569341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 9946530 - 9946591
Alignment:
Q  50 gggctgttctttagggagtgcaaagagctcaactgagcagggcctcctaaagtgacgggcct 111  Q
    |||| ||| ||| |||||||||||||||||||| |||| ||  |||||||||||| ||||||    
T  9946530 gggccgtttttttgggagtgcaaagagctcaaccgagctggatctcctaaagtgatgggcct 9946591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 6967508 - 6967399
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaag-gaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttt 220  Q
    |||||| |||| ||||||| | ||| |||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||| |    
T  6967508 ttattgttcaatatccccacccccaatcaaaaaaagaaaaataaacatgtttcatgtttcaatttttaagtaaaaaatcatgtttcatgtttctatttat 6967409  T
Q  221 aagttaaaaa 230  Q
    ||||||||||    
T  6967408 aagttaaaaa 6967399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 22867923 - 22868042
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagt---aaaaaatcatgttccatgcttttattt 218  Q
    ||||||||||| ||| ||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||   |||||||||||||||||| || |||||    
T  22867923 ttattgctcaatatctccacccccactcaaaaaagaaaaataaacatgtttcatgttgcaatttctaagtaaaaaaaaatcatgttccatgtttctattt 22868022  T
Q  219 ttaagttaaaaaacaggtct 238  Q
     ||||||  |||||| ||||    
T  22868023 ctaagttttaaaacacgtct 22868042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 11245296 - 11245385
Alignment:
Q  145 cactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagt-aaaaaatcatgttccatgcttttatttttaagttaaaaaaca 233  Q
    |||||||||| |||||||||| |||||||||||||||||||  |||| |||||||||||||||||| || ||||| |||||| |||||||    
T  11245296 cactcaaaaaagaaaaataaatatgtttcatgtttcaattttgaagtaaaaaaatcatgttccatgtttctatttctaagtttaaaaaca 11245385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 27246115 - 27246218
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattttta 221  Q
    ||||||||||| ||||||| | ||||||||||| ||||||||||||||       |||||||||||||||||||||||||||| |||| || ||||| ||    
T  27246115 ttattgctcaatatccccacccccactcaaaaaagaaaaataaacatg-------tttcaatttctaagtaaaaaatcatgtttcatg-ttctatttcta 27246206  T
Q  222 agttaaaaaaca 233  Q
    ||||||||||||    
T  27246207 agttaaaaaaca 27246218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 18673869 - 18673793
Alignment:
Q  156 gaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttatttttaagttaaaaaac 232  Q
    |||||| |||| ||||  ||||||| |||||||||||||||| ||||||||| | || ||||| || || |||||||    
T  18673869 gaaaaaaaaacttgttctatgtttctatttctaagtaaaaaaacatgttccaagtttatatttctaggtaaaaaaac 18673793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 284460 - 284385
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaat 198  Q
    ||||||||||| ||||||| | ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  284460 ttattgctcaatatccccacccccactcaaaaaagaaaaataaacatg-ttcatgttttaatttctaagtaaaaaat 284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 42624647 - 42624741
Alignment:
Q  122 ttattgctcaacatccccatcaccactcaaaaaggaaaaataaacatgtttcatgtttcaatttctaagtaaaaaatcatgttccatgcttttattt 218  Q
    |||||| |||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||| || |||||    
T  42624647 ttattgttcaatatctccatc-ccactcaaaaag-aaaaataaacatgtttcatgtttcaatttttaagtaaaaaattaggttccatgtttctattt 42624741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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