View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19043_high_18 (Length: 246)
Name: NF19043_high_18
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9672171 - 9671939
Alignment:
| Q |
1 |
ttaattatttctaaattatcacatatatagcattgaatttaataaaccataaagcctataatatagtaaactttaacagacaagaaagattcataaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9672171 |
ttaattatttctaaattatcacatatatagcattgaatttaataaatcataaagcctataatatagtaaactttaacagacaagaaagattcataaacaa |
9672072 |
T |
|
| Q |
101 |
tggaaatcatagcttgttattttccttggtcctatataggtacaaaggttgttaaattccaaaacaaactttcaaagttaggcatattgtttcataattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9672071 |
tggaaatcatagcttgttattttccttggtcctatataggtacaaaggttgttaaattccaaaacaaagtttcaaagttaggcatattgtttcataattg |
9671972 |
T |
|
| Q |
201 |
gaaccaaaaccagtggatggttatgtccaaagt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9671971 |
gaaccaaaaccagtggatggttatgtccaaagt |
9671939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University