View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19043_high_2 (Length: 492)

Name: NF19043_high_2
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19043_high_2
NF19043_high_2
[»] chr8 (25 HSPs)
chr8 (11-475)||(33866831-33867295)
chr8 (223-345)||(39460998-39461119)
chr8 (231-345)||(36720808-36720919)
chr8 (218-375)||(17823563-17823712)
chr8 (232-345)||(17250888-17251000)
chr8 (223-323)||(35261713-35261810)
chr8 (219-345)||(18164760-18164882)
chr8 (224-316)||(5689671-5689761)
chr8 (218-345)||(13160714-13160837)
chr8 (229-301)||(16013509-16013581)
chr8 (229-309)||(20284079-20284159)
chr8 (223-323)||(20869957-20870056)
chr8 (229-309)||(21070707-21070787)
chr8 (231-330)||(29877121-29877217)
chr8 (229-316)||(7136537-7136624)
chr8 (229-316)||(16225059-16225146)
chr8 (223-270)||(27468096-27468143)
chr8 (229-268)||(27507996-27508035)
chr8 (229-323)||(44530183-44530274)
chr8 (223-345)||(6760834-6760955)
chr8 (223-345)||(25250534-25250655)
chr8 (275-345)||(26954144-26954214)
chr8 (229-345)||(5135300-5135412)
chr8 (247-316)||(11748339-11748408)
chr8 (223-268)||(31457258-31457303)
[»] chr1 (21 HSPs)
chr1 (223-315)||(42304211-42304303)
chr1 (223-345)||(10668260-10668381)
chr1 (223-345)||(35005158-35005279)
chr1 (229-325)||(18741967-18742063)
chr1 (223-323)||(18944700-18944800)
chr1 (247-324)||(19932781-19932857)
chr1 (223-323)||(46247957-46248054)
chr1 (218-316)||(4349701-4349797)
chr1 (230-345)||(30395737-30395851)
chr1 (233-375)||(27201657-27201793)
chr1 (232-330)||(50811989-50812085)
chr1 (223-268)||(27474389-27474434)
chr1 (224-323)||(23768325-23768421)
chr1 (229-323)||(35117775-35117869)
chr1 (223-293)||(50606487-50606557)
chr1 (223-260)||(1517315-1517352)
chr1 (230-310)||(15505633-15505710)
chr1 (223-268)||(25554746-25554791)
chr1 (223-345)||(35253191-35253308)
chr1 (281-345)||(17470406-17470469)
chr1 (281-345)||(31442450-31442514)
[»] chr2 (24 HSPs)
chr2 (223-323)||(10543732-10543831)
chr2 (218-345)||(14530330-14530456)
chr2 (223-323)||(10546196-10546294)
chr2 (231-316)||(19615032-19615116)
chr2 (230-345)||(5841040-5841154)
chr2 (223-345)||(8455320-8455439)
chr2 (224-299)||(23488538-23488613)
chr2 (225-323)||(26684626-26684722)
chr2 (225-316)||(31158445-31158536)
chr2 (223-345)||(24200627-24200748)
chr2 (223-323)||(25079721-25079819)
chr2 (223-310)||(9671225-9671310)
chr2 (231-323)||(14544097-14544189)
chr2 (223-316)||(17623604-17623695)
chr2 (274-323)||(7214568-7214616)
chr2 (223-260)||(11514529-11514566)
chr2 (223-260)||(24859992-24860029)
chr2 (223-268)||(25249742-25249787)
chr2 (223-267)||(124918-124962)
chr2 (236-300)||(19185760-19185824)
chr2 (223-310)||(21779265-21779350)
chr2 (223-267)||(22371199-22371243)
chr2 (232-268)||(24890497-24890533)
chr2 (223-322)||(25632544-25632640)
[»] chr3 (20 HSPs)
chr3 (218-336)||(45786213-45786330)
chr3 (238-345)||(8247706-8247812)
chr3 (223-345)||(13628794-13628915)
chr3 (229-300)||(829452-829522)
chr3 (223-345)||(46421038-46421160)
chr3 (223-323)||(40272816-40272913)
chr3 (223-323)||(54484746-54484844)
chr3 (218-345)||(10795422-10795548)
chr3 (223-321)||(353353-353450)
chr3 (223-345)||(13730606-13730727)
chr3 (223-345)||(29366724-29366845)
chr3 (229-345)||(14986991-14987106)
chr3 (223-323)||(49013477-49013576)
chr3 (223-345)||(516443-516565)
chr3 (218-345)||(39203550-39203672)
chr3 (223-299)||(25517174-25517248)
chr3 (223-345)||(31592883-31593000)
chr3 (223-264)||(40390353-40390394)
chr3 (248-316)||(32418284-32418352)
chr3 (223-267)||(47624208-47624252)
[»] chr5 (12 HSPs)
chr5 (223-323)||(27328786-27328885)
chr5 (223-345)||(24448902-24449021)
chr5 (223-322)||(43334237-43334335)
chr5 (231-323)||(7097772-7097860)
chr5 (223-345)||(38879593-38879714)
chr5 (225-345)||(42924836-42924957)
chr5 (218-345)||(13801766-13801892)
chr5 (223-268)||(25622546-25622591)
chr5 (223-323)||(4619108-4619207)
chr5 (223-323)||(20135638-20135737)
chr5 (229-323)||(16880657-16880748)
chr5 (223-268)||(16957400-16957445)
[»] chr4 (27 HSPs)
chr4 (223-323)||(23501821-23501920)
chr4 (223-345)||(16408605-16408726)
chr4 (233-323)||(20405120-20405210)
chr4 (223-323)||(20639662-20639760)
chr4 (218-345)||(44363129-44363255)
chr4 (229-323)||(48327773-48327866)
chr4 (230-345)||(54730261-54730376)
chr4 (230-299)||(30352591-30352660)
chr4 (223-323)||(13256403-13256502)
chr4 (218-310)||(20225120-20225212)
chr4 (232-348)||(21489096-21489210)
chr4 (223-323)||(7909284-7909381)
chr4 (232-299)||(20908649-20908715)
chr4 (213-268)||(40553931-40553986)
chr4 (223-323)||(6430630-6430726)
chr4 (223-345)||(16911574-16911695)
chr4 (218-268)||(25388262-25388312)
chr4 (223-323)||(30639414-30639510)
chr4 (218-268)||(38755907-38755957)
chr4 (223-345)||(9832317-9832434)
chr4 (223-268)||(35532078-35532123)
chr4 (223-345)||(39077800-39077917)
chr4 (223-268)||(40915914-40915959)
chr4 (223-310)||(2813171-2813259)
chr4 (223-345)||(5648271-5648389)
chr4 (235-323)||(30581481-30581568)
chr4 (223-295)||(33836491-33836563)
[»] chr7 (19 HSPs)
chr7 (225-316)||(14732827-14732917)
chr7 (229-330)||(18747513-18747612)
chr7 (223-323)||(11617592-11617689)
chr7 (229-323)||(22698977-22699071)
chr7 (218-345)||(47716471-47716597)
chr7 (248-310)||(33500559-33500621)
chr7 (223-345)||(42805536-42805657)
chr7 (223-268)||(1408543-1408588)
chr7 (229-321)||(35334826-35334915)
chr7 (223-268)||(38262200-38262245)
chr7 (229-323)||(21566469-21566561)
chr7 (230-268)||(23231643-23231681)
chr7 (229-345)||(2541029-2541142)
chr7 (223-323)||(7879672-7879769)
chr7 (223-345)||(42391104-42391221)
chr7 (223-375)||(43557459-43557606)
chr7 (281-345)||(7644968-7645031)
chr7 (246-325)||(14099033-14099109)
chr7 (246-325)||(14409050-14409126)
[»] chr6 (7 HSPs)
chr6 (223-345)||(29355859-29355980)
chr6 (223-323)||(12221918-12222018)
chr6 (223-299)||(12885968-12886044)
chr6 (231-345)||(9161135-9161247)
chr6 (218-309)||(17432393-17432484)
chr6 (229-267)||(3815087-3815125)
chr6 (223-299)||(3116133-3116209)
[»] scaffold0049 (1 HSPs)
scaffold0049 (218-345)||(58989-59115)
[»] scaffold0057 (2 HSPs)
scaffold0057 (223-323)||(46865-46962)
scaffold0057 (233-323)||(24786-24873)
[»] scaffold0954 (1 HSPs)
scaffold0954 (230-268)||(3630-3668)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Complemental strand, 33867295 - 33866831
Alignment:
Q  11 ttattctagatattaaacatgcacaaatataactgaatgttattttcgaaagtgtagcttagatgtatcagttgaaatgttaaaaaagtattaacaatgt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33867295 ttattctagatattaaacatgcacaaatataactgaatgttattttcgaaagtgtagcttagatgtatcagttgaaatgttaaaaaagtattaacaatgt 33867196  T
Q  111 ggtataaagtggcaaatgctaagttcttattgaatgtgtgaaacaaatttaaaatgtatgccccttttagaccataataactaacactaaagtgacatgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33867195 ggtataaagtggcaaatgctaagttcttattgaatgtgtgaaacaaatttaaaatgtatgccccttttagaccataataactaacactaaagtgacatgt 33867096  T
Q  211 tctaaactaaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctg 310  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  33867095 tctaaactaaagggcaacccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttatgtattgtatgcagtcttaccctg 33866996  T
Q  311 cttttttacacaaaaagctgcttttaggacttgaatccgacccatgacctttcggtcacttgacatatactaaactagtttcacataaaacatcatcaca 410  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33866995 cttttttacacaaaaagttgtttttaggacttgaacccgacccatgacctttcggtcacttgacatatactaaactagtttcacataaaacatcatcaca 33866896  T
Q  411 aaagaacaatattcctcacaaaatctaaagcaatgaaataaattaacaaaatcatacctttaact 475  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33866895 aaagaacaatattcctcacaaaatctaaagcaatgaaagaaattaacaaaatcatacctttaact 33866831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 39460998 - 39461119
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  || |||||||| || ||||||||||||||  ||||| ||| |||||||||||    
T  39460998 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtctcaccattattggtgtattgtacgcagccttactctg-ttttttacaca 39461096  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  39461097 agaggctgtttccaggacttgaa 39461119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 36720919 - 36720808
Alignment:
Q  231 ggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctg 330  Q
    |||||||||||||||| ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||| |||||||||||| | ||||    
T  36720919 ggtgcactaaagcttccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg-ttttttacacaagaggctg 36720823  T
Q  331 cttttaggacttgaa 345  Q
     ||  ||||||||||    
T  36720822 tttccaggacttgaa 36720808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 375
Target Start/End: Complemental strand, 17823712 - 17823563
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| |||||||||||||||| ||||||| |||||||||||||||  ||  |||||  ||| ||||||| |||||| ||||| ||||  |||||    
T  17823712 taaagggcaacccggtgcactaaagctcctgcatatgcagggttcgggaaggggttccacca--tttggtgtattttacgcagtcttatcctg-gttttt 17823616  T
Q  318 acacaaaaagctgcttttaggacttgaatccgacccatgacctttcggtcacttgaca 375  Q
    |||||| | |||| ||  |||||||||     |||| ||||||||||||||| |||||    
T  17823615 acacaagaggctgtttccaggacttga-----acccgtgacctttcggtcacatgaca 17823563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 17250888 - 17251000
Alignment:
Q  232 gtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgc 331  Q
    ||||||||||||| || |||||||||||||||||||   ||  ||||||| || |||||||||||||   |||| |||| |||||||||||| | |||||    
T  17250888 gtgcactaaagctccttcatacgcagggttcgggaaagggtcccaccattattggtgtattgtacgctgccttaacctg-ttttttacacaagaggctgc 17250986  T
Q  332 ttttaggacttgaa 345  Q
    ||  ||||||||||    
T  17250987 ttccaggacttgaa 17251000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 35261810 - 35261713
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| | |||||  ||  |||||  ||| ||||||||||||||| ||||||||| |||||||||||    
T  35261810 ggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccacca--tttggtgtattgtacgcaaccttaccctg-ttttttacaca 35261714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 18164760 - 18164882
Alignment:
Q  219 aaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttta 318  Q
    ||||||||| |||||||||||||||| | ||||||||||||| |||||  ||  |||||    ||| ||||||||||||||| |||||||||  ||||||    
T  18164760 aaatggcaacccggtgcactaaagctcccgcatacgcagggtccggga--aatggtcacatcctttggtgtattgtacgcaaccttaccctg--ttttta 18164855  T
Q  319 cacaaaaagctgcttttaggacttgaa 345  Q
    ||||| | |||| ||  ||||||||||    
T  18164856 cacaagaggctgtttccaggacttgaa 18164882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 5689761 - 5689671
Alignment:
Q  224 gcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    |||| |||||||||||||||| |  |||||||| |||||||||||  ||  |||||  ||| ||||||||||||||  |||||||||||||||    
T  5689761 gcaaaccggtgcactaaagctcccacatacgcatggttcgggaaggggttccacca--tttggtgtattgtacgcagccttaccctgcttttt 5689671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 13160837 - 13160714
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| |||| ||||| ||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||||||  |||||    
T  13160837 taaagggcaacccggcgcactgaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg--ttttt 13160742  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    |||||| | |||| || |||||||||||    
T  13160741 acacaagaggctgtttctaggacttgaa 13160714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 16013581 - 16013509
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaat 301  Q
    |||||||||||||||| | ||||| |||||||  ||||||  ||  |||||||||| ||||||||||||||||    
T  16013581 ccggtgcactaaagctcccgcataggcagggtctgggaaggggtcgcaccatttttagtgtattgtacgcaat 16013509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 20284079 - 20284159
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccct 309  Q
    ||||||||||||| || | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||    
T  20284079 ccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccct 20284159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 20870056 - 20869957
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||| || |||| | |||||  ||  ||||||| || ||||||||||||||  ||||||||| |||||||||||    
T  20870056 ggcaacccggtgcactaaagctcccgcatatgcggggtcctggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacaca 20869958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 21070707 - 21070787
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccct 309  Q
    ||||||||||||| || | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||    
T  21070707 ccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccct 21070787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 29877217 - 29877121
Alignment:
Q  231 ggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctg 330  Q
    |||||||||| ||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||| |||||||||||||| ||||    
T  29877217 ggtgcactaacgctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg-ttttttacacaaaaggctg 29877121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 7136537 - 7136624
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    |||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| |||||    
T  7136537 ccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctggttttt 7136624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Complemental strand, 16225146 - 16225059
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    |||||||||||||||| | ||||| || |||| |||||||   |  ||||||| || |||||||||||||| |||||||||| |||||    
T  16225146 ccggtgcactaaagctcccgcatatgcggggtccgggaagggatcccaccattattggtgtattgtacgcagtcttaccctgtttttt 16225059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 27468096 - 27468143
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaa 270  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||||    
T  27468096 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagaa 27468143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 27508035 - 27507996
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  27508035 ccggtgcactaaagctcccgcatacgcagggttcgggaag 27507996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 44530274 - 44530183
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||||||| | ||||||||||||| | |||||  ||  |||||  ||| ||||||||||||||  ||||||||| ||||||||||||    
T  44530274 ccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg-ttttttacacaa 44530183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 6760955 - 6760834
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||| || |||| || ||||  ||  ||||||| || |||||||||||| |  ||||||||| |||||||||||    
T  6760955 ggcaacccggtgcactaaagctcccgcatatgcggggtccgagaaggggtcccaccattattggtgtattgtacgaagccttaccctg-ttttttacaca 6760857  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  6760856 agaggctgtttccaggacttgaa 6760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 25250655 - 25250534
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||||| || | ||||| || ||||||||||||  ||  ||||||| || ||||||||||||||  | ||||||  |||||||||||    
T  25250655 ggcaacccggtgcactaaatctcccgcatatgcggggttcgggaaggggtcccaccattattggtgtattgtacgcagccataccct-attttttacaca 25250557  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  25250556 ataggctgtttccaggacttgaa 25250534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 26954214 - 26954144
Alignment:
Q  275 caccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgcttttaggacttgaa 345  Q
    ||||||| || ||||||||||||||  ||||||||| |||||||||||| | |||| ||  ||||||||||    
T  26954214 caccattattggtgtattgtacgcagccttaccctgtttttttacacaagaggctgtttccaggacttgaa 26954144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 5135300 - 5135412
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagc 328  Q
    ||||||||| |||||| ||||||||||||||| |||||||  ||  |||||  ||| ||||||||||| ||  |||||||| ||||||||||||| | ||    
T  5135300 ccggtgcac-aaagctcctgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacacagccttaccct-cttttttacacaagaggc 5135395  T
Q  329 tgcttttaggacttgaa 345  Q
    || ||  ||||||||||    
T  5135396 tgtttccaggacttgaa 5135412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 11748408 - 11748339
Alignment:
Q  247 tgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    |||||| ||||| |||||||||  ||   |||||||||||| ||||||||||  ||||||||||||||||    
T  11748408 tgcatatgcaggattcgggaaggggtcctaccattttttgtatattgtacgctgtcttaccctgcttttt 11748339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 31457303 - 31457258
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    ||||||||||||||||| |||| | |||||||||||||| ||||||    
T  31457303 ggcaatccggtgcactagagctcccgcatacgcagggtttgggaag 31457258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 42304211 - 42304303
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttt 315  Q
    |||||||||||||||||||||| |  |||||||||||| |||||||  ||  |||||||||||||||||||||||||| ||||||||| ||||    
T  42304211 ggcaatccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattttttgtgtattgtacgcaaccttaccctgttttt 42304303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 10668381 - 10668260
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||  |||||||  ||  ||||||| || ||||||||||||||| |||||| || |||||||||||    
T  10668381 ggcaacccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccattattggtgtattgtacgcaaccttaccttg-ttttttacaca 10668283  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  10668282 agaggctgtttccaggacttgaa 10668260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 35005279 - 35005158
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||  | ||||||||||||| |||||||  ||  |||||||||| |||||||||| |||  ||||||||| |||||||||||    
T  35005279 ggcaacccggtgcactaaagcgcccgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtatgcagccttaccctg-ttttttacaca 35005181  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||| | ||||||||    
T  35005180 agaggctgttttcaagacttgaa 35005158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 18741967 - 18742063
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaa 325  Q
    ||||||||||||||||   |||||||||||||  ||||||  ||  |||||||||| ||||||||||||||  ||||||||| ||||||| ||||||    
T  18741967 ccggtgcactaaagctctcgcatacgcagggtctgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgtttttttatacaaaa 18742063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 18944800 - 18944700
Alignment:
Q  223 ggcaatccggtgcactaaa-gcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    ||||| ||||||||||||| ||| | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||||||    
T  18944800 ggcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattgttggtgtattgtacgcagccttaccctg-ttttttacac 18944702  T
Q  322 aa 323  Q
    ||    
T  18944701 aa 18944700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 19932781 - 19932857
Alignment:
Q  247 tgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaa 324  Q
    |||||||||||||| |||||||  ||  |||||||||| ||||||||||||||  ||||||||| |||||||||||||    
T  19932781 tgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctg-ttttttacacaaa 19932857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 46247957 - 46248054
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||| |||||||||| | ||||||||||||| |||||||  ||  |||||  ||| |||||||||||||| |||||||||| |||||||||||    
T  46247957 ggcaacccggtacactaaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagtcttaccctg-ttttttacaca 46248053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 4349797 - 4349701
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    |||| ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||| |||||    
T  4349797 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctgtttttt 4349701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 30395737 - 30395851
Alignment:
Q  230 cggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagct 329  Q
    ||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| |||||||||||| | |||    
T  30395737 cggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacacaagaggct 30395835  T
Q  330 gcttttaggacttgaa 345  Q
    | ||  ||||||||||    
T  30395836 gtttccaggacttgaa 30395851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 27201793 - 27201657
Alignment:
Q  233 tgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgct 332  Q
    |||||||||||| | ||||||||| ||| |||||||  ||  |||||||||| ||||||||||||||  ||||||||| ||| | |||||| | |||| |    
T  27201793 tgcactaaagctcccgcatacgcaaggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctg-tttctgacacaagaggctgtt 27201695  T
Q  333 tttaggacttgaatccgacccatgacctttcggtcacttgaca 375  Q
    |  |||||||||     |||||||||||||| ||||| |||||    
T  27201694 tccaggacttga-----acccatgacctttcagtcacatgaca 27201657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 50812085 - 50811989
Alignment:
Q  232 gtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctg 330  Q
    ||||| ||||||| | ||||||||||||  |||||||  ||  ||||| |||| ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  50812085 gtgcattaaagctcccgcatacgcagggcgcgggaaggggt-ccacca-ttttggtgtattgtacgcaaccttaccctgtttttttacacaagaagctg 50811989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 27474434 - 27474389
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||    
T  27474434 ggcaatccggtgcactaaagctcccgcatacgcagggtccgggaag 27474389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 323
Target Start/End: Original strand, 23768325 - 23768421
Alignment:
Q  224 gcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||| |||||||||||| | |||||||||||||  ||||||  ||  |||||  ||| ||||||||||||||  ||||||||| ||||||||||||    
T  23768325 gcaatccgctgcactaaagctcccgcatacgcagggtctgggaaggtgtcccacca--tttggtgtattgtacgcagccttaccctg-ttttttacacaa 23768421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 35117775 - 35117869
Alignment:
Q  229 ccggtgcactaaagcttctgcat-acgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||||||| |||||| ||||||||| |||||||  ||  || ||||||| ||||||||||| ||  ||||||||| | ||||||||||    
T  35117775 ccggtgcactaaagctcctgcattacgcagggtccgggaaggggtcccatcatttttggtgtattgtacacagccttaccctg-tattttacacaa 35117869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 50606557 - 50606487
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattg 293  Q
    ||||| |||||||||||||||| | ||||| ||||||| |||||||  ||  |||||||||| ||||||||    
T  50606557 ggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccatttttggtgtattg 50606487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 1517315 - 1517352
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggt 260  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  1517315 ggcaacccggtgcactaaagctcctgcatacgcagggt 1517352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 15505710 - 15505633
Alignment:
Q  230 cggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctg 310  Q
    |||||||| |||||| | |||||||||||||||||||||  ||  |||||  ||| |||||||||||||| ||||||||||    
T  15505710 cggtgcac-aaagctcccgcatacgcagggttcgggaaggggtcccacca--tttggtgtattgtacgcagtcttaccctg 15505633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 25554746 - 25554791
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||| ||||||||||||| ||| | |||||||||||||||||||||    
T  25554746 ggcagtccggtgcactaatgctcccgcatacgcagggttcgggaag 25554791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 35253191 - 35253308
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||||||||||||||| |||| | ||||| ||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||||||   |||||||||    
T  35253191 ggcaatccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg---ttttacaca 35253285  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  35253286 agaggctgtttcgaggacttgaa 35253308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 17470406 - 17470469
Alignment:
Q  281 tttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgcttttaggacttgaa 345  Q
    |||| ||||||||||||||  ||||||||| |||||||||||| | |||| || |||||||||||    
T  17470406 ttttggtgtattgtacgcagccttaccctg-ttttttacacaagaggctgtttctaggacttgaa 17470469  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 31442450 - 31442514
Alignment:
Q  281 tttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgcttttaggacttgaa 345  Q
    |||| ||||||||||||||  ||||||||| ||||||||| |||| |||| || || ||||||||    
T  31442450 ttttggtgtattgtacgcatccttaccctgtttttttacataaaaggctgtttctaagacttgaa 31442514  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 10543831 - 10543732
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||||||| ||||||||||||||  ||||||||| |||||||||||    
T  10543831 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctg-ttttttacaca 10543733  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 14530456 - 14530330
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  ||||||| || |||||||||||| |  ||||||||| ||||||    
T  14530456 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgtagccttaccctg-tttttt 14530358  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    | |||| | |||| ||  ||||||||||    
T  14530357 atacaagaggctgtttccaggacttgaa 14530330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 10546294 - 10546196
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||| ||||||| |||    
T  10546294 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctgtttttttataca 10546197  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 19615116 - 19615032
Alignment:
Q  231 ggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    |||||||||||||| |||||||||||||||||||||||  ||  ||| ||| || || ||||||||||| |||||||||| |||||    
T  19615116 ggtgcactaaagctcctgcatacgcagggttcgggaaggggt-ccactattattggtatattgtacgcagtcttaccctgtttttt 19615032  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 5841154 - 5841040
Alignment:
Q  230 cggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagct 329  Q
    ||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| ||  |||||||||||||  ||||||||  |||||||||||||| |||    
T  5841154 cggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattgatgtattgtacgcatccttaccct-attttttacacaaaaggct 5841056  T
Q  330 gcttttaggacttgaa 345  Q
    | || |||||||||||    
T  5841055 gtttctaggacttgaa 5841040  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 8455320 - 8455439
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||| | |||||||||    
T  8455320 ggcaacccggtgcactaaagctccggcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg-tgttttacaca 8455416  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  8455417 agaggctgtttccaggacttgaa 8455439  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 23488613 - 23488538
Alignment:
Q  224 gcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgca 299  Q
    |||| ||||||||||||||||   ||||||||||||| |||||||  ||  ||||||||||||||||||| |||||    
T  23488613 gcaacccggtgcactaaagctctcgcatacgcagggtccgggaaggggtcccaccattttttgtgtattgcacgca 23488538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 26684626 - 26684722
Alignment:
Q  225 caatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||| ||||||| | |||||||||||||||||||||| ||  |||||  ||| || |||||||||||  |||||| |  ||||||||||||    
T  26684626 caatccggtgcattaaagctcccgcatacgcagggttcgggaagaggtcccacca--tttagtatattgtacgcagccttaccatatttttttacacaa 26684722  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 31158445 - 31158536
Alignment:
Q  225 caatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    ||||| |||| ||||||||| | |||||||||||||  ||||||  ||  |||||||||| || ||||||| |||||||||||||| |||||    
T  31158445 caatcaggtgtactaaagctcccgcatacgcagggtctgggaaggggtcccaccatttttggtttattgtatgcaatcttaccctgtttttt 31158536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 24200627 - 24200748
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||||||||    ||||| |||||| |||||||   |  |||||||||| ||||||||||||||  ||||||||| |||||||||||    
T  24200627 ggcaacccggtgcactaaagctctcacatactcagggtccgggaagggttcccaccatttttggtgtattgtacgcagccttaccctg-ttttttacaca 24200725  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  24200726 agaggctgtttccaggacttgaa 24200748  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 25079721 - 25079819
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||||||||  |||||||||||||| |||||||  ||  |||||  ||  ||||||||||||||  |||||| || |||||||||||    
T  25079721 ggcaacccggtgcactaaagctcttgcatacgcagggtccgggaaggggtcccacca--ttcggtgtattgtacgcatccttaccttgtttttttacaca 25079818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 9671310 - 9671225
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctg 310  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||||||    
T  9671310 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg 9671225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 14544189 - 14544097
Alignment:
Q  231 ggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||||| | ||||||||||||| | |||||  ||   |||||||||||  ||||| ||||| |||||||||| |||| |||||||    
T  14544189 ggtgcactaaagctcccgcatacgcagggtcccggaaggggtccgaccattttttggttattgcacgcagtcttaccctgtttttctacacaa 14544097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 17623695 - 17623604
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    ||||| || |||||||||||||||  |||||||||| |||||||||  ||  |||||  ||| ||||||||||||||  ||||||||| |||||    
T  17623695 ggcaacccagtgcactaaagcttccacatacgcaggattcgggaaggggttccacca--tttggtgtattgtacgcagccttaccctgattttt 17623604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 7214616 - 7214568
Alignment:
Q  274 tcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    ||||||||||||||||||||||||||  ||||||||| | ||||||||||    
T  7214616 tcaccattttttgtgtattgtacgcagccttaccctg-tattttacacaa 7214568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 11514566 - 11514529
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggt 260  Q
    |||||||||||||||||||||| | |||||||||||||    
T  11514566 ggcaatccggtgcactaaagctcccgcatacgcagggt 11514529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 24859992 - 24860029
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggt 260  Q
    |||||||||||||||||||||| | |||||||||||||    
T  24859992 ggcaatccggtgcactaaagctcccgcatacgcagggt 24860029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 25249742 - 25249787
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    ||||| ||||||||||||||||   |||||||||||||||||||||    
T  25249742 ggcaacccggtgcactaaagctcacgcatacgcagggttcgggaag 25249787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 124918 - 124962
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaa 267  Q
    ||||| |||||||||||||||| | ||||||||||||| ||||||    
T  124918 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaa 124962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 19185760 - 19185824
Alignment:
Q  236 actaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaa 300  Q
    ||||||||| | ||||||||||||| | |||||  ||  |||||||||||||| |||||||||||    
T  19185760 actaaagctcccgcatacgcagggtccaggaaggggttccaccattttttgtgcattgtacgcaa 19185824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 21779265 - 21779350
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctg 310  Q
    ||||| ||||||||||| |||| | ||||| ||||||| |||||||  ||  |||||  ||| ||||||||||||||| |||||||||    
T  21779265 ggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcaaccttaccctg 21779350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 22371243 - 22371199
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaa 267  Q
    ||||| |||||||||||||||| | ||||||||||||| ||||||    
T  22371243 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaa 22371199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 24890533 - 24890497
Alignment:
Q  232 gtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  24890533 gtgcactaaagctcctgcatacgcagggtccgggaag 24890497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 25632640 - 25632544
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||| | ||||||||||| | |  |||||  ||| ||||||||||||||  |||| |||| |||||||||||    
T  25632640 ggcaacccggtgcactaaagctcccgcatacgtaaggttcgggaaggaatcccacca--tttggtgtattgtacgcagccttatcctg-ttttttacaca 25632544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 45786213 - 45786330
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| |||||||||||||||| | |||| |||||||| |||||||  ||  |||||||||| ||||||||||||||  ||||||||| ||||||    
T  45786213 taaagggcaacccggtgcactaaagctccagcattcgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctg-tttttt 45786311  T
Q  318 acacaaaaagctgctttta 336  Q
    |||||| | |||| |||||    
T  45786312 acacaagaggctgttttta 45786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 8247706 - 8247812
Alignment:
Q  238 taaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgcttttag 337  Q
    ||||||| | ||||||||||||| ||||||| |||  ||||||| || ||||||||||||||| ||||||||| |||||||||||| | |||| ||  ||    
T  8247706 taaagctcccgcatacgcagggtccgggaaggagtcccaccattattggtgtattgtacgcaaccttaccctg-ttttttacacaagaggctgtttccag 8247804  T
Q  338 gacttgaa 345  Q
    ||||||||    
T  8247805 gacttgaa 8247812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 13628794 - 13628915
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||| |||||||    
T  13628794 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-tttcttacaca 13628892  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  13628893 agaggctgtttccaggacttgaa 13628915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 829452 - 829522
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaa 300  Q
    |||||||||||||||| |||||||||||||||||||||||  ||  ||||| |||| |||||||||||||||    
T  829452 ccggtgcactaaagctcctgcatacgcagggttcgggaaggggtcccacca-ttttggtgtattgtacgcaa 829522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 46421038 - 46421160
Alignment:
Q  223 ggcaatccggtgcact-aaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    ||||| |||||||||| |||||| | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||||||    
T  46421038 ggcaaaccggtgcacttaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacac 46421136  T
Q  322 aaaaagctgcttttaggacttgaa 345  Q
    || | |||| ||  ||||||||||    
T  46421137 aagaggctgtttccaggacttgaa 46421160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 40272816 - 40272913
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||| |||||||||||    
T  40272816 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg-ttttttacaca 40272912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 54484844 - 54484746
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||| || |||||||||||    
T  54484844 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccttgtttttttacaca 54484747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 10795422 - 10795548
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| | |||||||| ||||| | ||||||||||||| | |||||  ||  |||||||||| ||||||||||||||  ||||||||| | ||||    
T  10795422 taaagggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccatttttggtgtattgtacgcagccttaccctg-tctttt 10795520  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    |||||| | |||| ||  ||||||||||    
T  10795521 acacaagaggctgtttccaggacttgaa 10795548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 321
Target Start/End: Original strand, 353353 - 353450
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    ||||| |||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||||||    
T  353353 ggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacac 353450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 13730606 - 13730727
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||| ||  ||||||||| |||||||||||    
T  13730606 ggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacacagccttaccctg-ttttttacaca 13730704  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  13730705 agaggctgtttccaggacttgaa 13730727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 29366724 - 29366845
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| || ||||||||||||| |  |||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||| |||    
T  29366724 ggcaacccagtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttataca 29366822  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  29366823 agaggctgtttccaggacttgaa 29366845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 14987106 - 14986991
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagc 328  Q
    |||||||||||||||| | ||||| ||| ||| ||||||   ||  ||||||| || ||||||||||||||  ||||||||| |||||||||||| | ||    
T  14987106 ccggtgcactaaagctcccgcatatgcaaggtccgggaatgggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacacaagaggc 14987008  T
Q  329 tgcttttaggacttgaa 345  Q
    || ||  ||||||||||    
T  14987007 tgtttccaggacttgaa 14986991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 49013477 - 49013576
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | || || || |||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| |||||||||||    
T  49013477 ggcaacccggtgcactaaagctcccgcgtatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacaca 49013575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 516565 - 516443
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccatttttt-gtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    ||||| |||||||||||||||| | |||||||||||||  ||||||  ||  | ||||||||| || |||||| ||||  ||||||||| ||||||||||    
T  516565 ggcaacccggtgcactaaagctcccgcatacgcagggtcggggaaggggtcccgccattttttggtttattgtgcgcagccttaccctg-ttttttacac 516467  T
Q  322 aaaaagctgcttttaggacttgaa 345  Q
    || | |||| ||  ||||||||||    
T  516466 aagaggctgtttccaggacttgaa 516443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 39203672 - 39203550
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| |||||||||||||||| | ||||| ||| ||| |||||||  ||  |||||  ||| ||||||||||||||| |||||||||   ||||    
T  39203672 taaagggcaacccggtgcactaaagctcccgcatatgcaaggtccgggaaggggtcccacca--tttggtgtattgtacgcaaccttaccctg---tttt 39203578  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    |||||| | |||| ||  ||||||||||    
T  39203577 acacaagaggctgtttcaaggacttgaa 39203550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 25517174 - 25517248
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgca 299  Q
    ||||| |||||||||||||||| | ||||||||||| | |||||||  ||  |||||  ||||||||||||||||||    
T  25517174 ggcaacccggtgcactaaagctccagcatacgcaggatccgggaaggggtcccacca--ttttgtgtattgtacgca 25517248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 31593000 - 31592883
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||| |||| | ||||| ||||||| ||||||| |||  |||||  ||| ||||||||||||||  |||||||||   |||||||||    
T  31593000 ggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggagtcccacca--tttggtgtattgtacgcagccttaccctg---ttttacaca 31592906  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  31592905 agaggctgtttccaggacttgaa 31592883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 40390394 - 40390353
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgg 264  Q
    ||||| |||||||||||||||| | |||||||||||||||||    
T  40390394 ggcaacccggtgcactaaagctcccgcatacgcagggttcgg 40390353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 32418352 - 32418284
Alignment:
Q  248 gcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    ||||||| || ||||| ||||||||  ||||||||||||| ||||||| ||| ||||| |||| |||||    
T  32418352 gcatacgtagagttcgagaagaagtcccaccattttttgtttattgtatgcagtcttatcctgattttt 32418284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 47624252 - 47624208
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaa 267  Q
    ||||| |||||||||||||||| | ||||||||||||| ||||||    
T  47624252 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaa 47624208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 27328885 - 27328786
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||||||| |||| ||||||| | |||||||||||||||||||||  ||  ||||||| || ||||||||||||||  ||||||||| |||||||||||    
T  27328885 ggcaatccgatgcattaaagctcccgcatacgcagggttcgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacaca 27328787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 24449021 - 24448902
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||  |||||||||||    
T  24449021 ggcaacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccct-attttttacaca 24448925  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    ||| |||| ||  ||||||||||    
T  24448924 aaaggctgtttccaggacttgaa 24448902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 43334335 - 43334237
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | |||| |||||||| |||||||  ||  |||||||||| ||||||||||||||  ||||||||| |||||||||||    
T  43334335 ggcaacccggtgcactaaagctcccgcat-cgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgtttttttacaca 43334237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 7097772 - 7097860
Alignment:
Q  231 ggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||||| | |||||||||||||||||||||  || ||||||  ||| ||||||||||||||| |||||||||  |||||||||||    
T  7097772 ggtgcactaaagctcccgcatacgcagggttcgggaaggggtctcacca--tttggtgtattgtacgcaaccttaccctg--tttttacacaa 7097860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 38879714 - 38879593
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||| |||    
T  38879714 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttataca 38879616  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  38879615 agaggctgtttccaggacttgaa 38879593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 42924836 - 42924957
Alignment:
Q  225 caatccggtgcactaaagcttctgcatacgcagggt-tc-gggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||   |  || ||||||| ||||||||||||||| ||||||||| |||||||||||    
T  42924836 caatccggtgcactaaagcttccgcatacgcagggtgtctgggaagggattccatcatttttggtgtattgtacgcaaccttaccctg-ttttttacaca 42924934  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | | || ||| ||||||||||    
T  42924935 agatgttgttttcaggacttgaa 42924957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 13801766 - 13801892
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| ||||||||||||||||   ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||    
T  13801766 taaagggcaacccggtgcactaaagctctcgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-tttttt 13801864  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    |||||| | |||||||  ||||||||||    
T  13801865 acacaagaggctgcttccaggacttgaa 13801892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 25622591 - 25622546
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||    
T  25622591 ggcaatccggtgcactaaagctcccgcatacgcagggtccgggaag 25622546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 4619108 - 4619207
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||||||||   ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| |||||||||||    
T  4619108 ggcaacccggtgcactaaagctctcgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacaca 4619206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 20135737 - 20135638
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||| ||||| ||||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  |||||| || |||||||||||    
T  20135737 ggcaacccggtgcactgaagctcctgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccttg-ttttttacaca 20135639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 16880657 - 16880748
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||||||| | ||||||||| ||| |||||||  ||  |||||  ||| ||||||||||||||  ||||||||| ||||||||||||    
T  16880657 ccggtgcactaaagctcccgcatacgcatggtccgggaagtggtcacacca--tttggtgtattgtacgcagccttaccctg-ttttttacacaa 16880748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 16957445 - 16957400
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||    
T  16957445 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaag 16957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 23501920 - 23501821
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||| ||||||| |||||||  ||  ||||||| || ||||||||||||||| ||||||||| |||||||||||    
T  23501920 ggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccattattggtgtattgtacgcaaccttaccctg-ttttttacaca 23501822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 16408605 - 16408726
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| || |||||||||||||| |||||||||| |||||||||||    
T  16408605 ggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggttccaccattattggtgtattgtacgcagtcttaccctg-ttttttacaca 16408703  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  16408704 agaggctgtttccaggacttgaa 16408726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 20405210 - 20405120
Alignment:
Q  233 tgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  20405210 tgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattagtgtattgtacgcaatcttaccctgtttttttacacaa 20405120  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 20639662 - 20639760
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  ||||| |||| ||||||||||||||  ||||||||| |||||||||||    
T  20639662 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-ttttggtgtattgtacgcagccttaccctg-ttttttacaca 20639759  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 44363129 - 44363255
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||||||| |||  |||||||||  | ||||||| ||||||    
T  44363129 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttttggtgcgttgtacgcagccctaccctg-tttttt 44363227  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    |||||  | |||| ||| ||||||||||    
T  44363228 acacacgaggctgttttcaggacttgaa 44363255  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 48327773 - 48327866
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    ||||||||||||| |||| ||||| |  ||||||||||||| ||  ||||||| || |||||||||| ||| |||||||||| ||||||||||||    
T  48327773 ccggtgcactaaaacttccgcatatgtggggttcgggaagaggtcccaccattattggtgtattgtatgcagtcttaccctg-ttttttacacaa 48327866  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 54730376 - 54730261
Alignment:
Q  230 cggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagct 329  Q
    ||||||||||||||| | ||||||||||||| |||||||  ||  || |||| || ||||||| ||||||  |||| |||  |||||||||||| | |||    
T  54730376 cggtgcactaaagctcccgcatacgcagggtccgggaaggggttccatcattattggtgtattatacgcagccttatcctatttttttacacaagaggct 54730277  T
Q  330 gcttttaggacttgaa 345  Q
    | || |||||||||||    
T  54730276 gtttctaggacttgaa 54730261  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 30352591 - 30352660
Alignment:
Q  230 cggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgca 299  Q
    ||||||||||||||| | ||||||||||||| || ||||  ||  |||||||||| ||||||||||||||    
T  30352591 cggtgcactaaagctcccgcatacgcagggtccgagaaggggtcccaccatttttggtgtattgtacgca 30352660  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 13256403 - 13256502
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||| | || ||||||||||||  ||  ||| ||| || ||||||||||||||  ||||||||| |||||||||||    
T  13256403 ggcaacccggtgcactaaagctcccgcagatgcggggttcgggaaggggtcccactattattggtgtattgtacgcagccttaccctg-ttttttacaca 13256501  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 310
Target Start/End: Complemental strand, 20225212 - 20225120
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctg 310  Q
    |||| ||||| |||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  |||||||||    
T  20225212 taaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg 20225120  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 348
Target Start/End: Complemental strand, 21489210 - 21489096
Alignment:
Q  232 gtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgc 331  Q
    |||||| |||||| | |||||||||||||||||||||  ||  ||||| |||| ||| |||||||||| |||||| ||| |||||||| ||| | ||||     
T  21489210 gtgcacgaaagctcccgcatacgcagggttcgggaaggggtcccacca-ttttggtgcattgtacgcagtcttactctg-ttttttacgcaagaggctgt 21489113  T
Q  332 ttttaggacttgaatcc 348  Q
    ||  |||||||||||||    
T  21489112 ttccaggacttgaatcc 21489096  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 7909284 - 7909381
Alignment:
Q  223 ggcaatccggtgcactaaagcttct-gcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    ||||| ||| |||||||||||| |  |||||||||||||||||||||  ||  ||||||||   ||||||||||||||| |||||||||  |||||||||    
T  7909284 ggcaacccgatgcactaaagctccccgcatacgcagggttcgggaaggggtcccaccatttg--gtgtattgtacgcaaccttaccctg--tttttacac 7909379  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 20908649 - 20908715
Alignment:
Q  232 gtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgca 299  Q
    ||||||||||||| | |||||||||||||||||||||  ||  ||||| |||| ||||||||||||||    
T  20908649 gtgcactaaagctcccgcatacgcagggttcgggaaggggtcccacca-ttttggtgtattgtacgca 20908715  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 40553931 - 40553986
Alignment:
Q  213 taaactaaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||| |||| ||||| |||||||||||||||| | ||||||||||||| |||||||    
T  40553931 taaattaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaag 40553986  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 6430630 - 6430726
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||| |||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||||||  ||||||||||    
T  6430630 ggcaacccggtgcgctaaagctcccgcatacgcagggtccgggaagtggtcccacca--tttggtgtattgtacgcagccttaccctg--tttttacaca 6430725  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 16911695 - 16911574
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||  ||||||||| | || |||||||||| |||||||  ||  ||||||| || ||||||||||||||  |||||||||  ||| ||||||    
T  16911695 ggcaacccggtaaactaaagctcccgcgtacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-atttgtacaca 16911597  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| || |||||||||||    
T  16911596 agaggctgtttctaggacttgaa 16911574  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 25388312 - 25388262
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||| ||||| ||||||||||||||||  |||||||||||||| |||||||    
T  25388312 taaagggcaacccggtgcactaaagctcatgcatacgcagggtccgggaag 25388262  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 30639510 - 30639414
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| || ||||||||||||| | ||||| ||||||| |||||||  || ||||||  ||| ||||||||||||||  |||||||||  ||||||||||    
T  30639510 ggcaacccagtgcactaaagctcccgcatatgcagggtccgggaaggggtctcacca--tttggtgtattgtacgcagccttaccctg--tttttacaca 30639415  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 38755907 - 38755957
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||| ||||| |||||||||||||||| | ||||||||||||| |||||||    
T  38755907 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaag 38755957  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 9832317 - 9832434
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||| || | ||||||| ||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||||||   |||||||||    
T  9832317 ggcaacccggtgcactagagttcctgcatatgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg---ttttacaca 9832411  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||| ||||||||||    
T  9832412 agaggctgttttcaggacttgaa 9832434  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 35532123 - 35532078
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||    
T  35532123 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaag 35532078  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 39077800 - 39077917
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||| |||| | ||||| ||||||| ||| |||| || ||||||  ||| || |||||||||||| |||||||||   |||||||||    
T  39077800 ggcaacccggtgcactagagctcccgcatatgcagggtccggaaagatgtctcacca--tttggtatattgtacgcaaccttaccctg---ttttacaca 39077894  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  39077895 agaggctgtttccaggacttgaa 39077917  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 40915959 - 40915914
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||||||||||||||| ||||| | ||||||||||||| |||||||    
T  40915959 ggcaatccggtgcactgaagctcccgcatacgcagggtccgggaag 40915914  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 2813259 - 2813171
Alignment:
Q  223 ggcaatccggtgcact-aaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctg 310  Q
    |||||||||||||||| |||||| | |||||||||  |||||||||   ||  ||||||| ||  ||||||||||||| ||||||||||    
T  2813259 ggcaatccggtgcacttaaagctcccgcatacgcatcgttcgggaaagggtcccaccattattgatgtattgtacgcagtcttaccctg 2813171  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 5648389 - 5648271
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| || ||||||| ||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||||||  ||||||||||    
T  5648389 ggcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg--tttttacaca 5648294  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  5648293 agaggctgtttccaggacttgaa 5648271  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 30581481 - 30581568
Alignment:
Q  235 cactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||| || |||| ||||||| |||||||  ||  |||||||||  ||||||||||| ||  ||||||||| ||||||||||||    
T  30581481 cactaaagctcctacatatgcagggtccgggaaggggtcccaccattttg-gtgtattgtacacacccttaccctgtttttttacacaa 30581568  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 33836491 - 33836563
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgta 295  Q
    ||||| ||| |||||||||||| | ||||||||||||| |||||||  ||  ||||||| || ||||||||||    
T  33836491 ggcaacccgttgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgta 33836563  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 14732827 - 14732917
Alignment:
Q  225 caatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttt 316  Q
    |||||||||||||||||||| | |||||  |||||||||||||| ||| ||||||||||| |||||||| |||||  ||||||||| |||||    
T  14732827 caatccggtgcactaaagctcccgcataaacagggttcgggaaggagtttcaccatttttggtgtattg-acgcagccttaccctgtttttt 14732917  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 18747612 - 18747513
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagc 328  Q
    |||||||||||||||| | ||||||||||||||| |||||  ||  ||||| ||   ||||||| ||||||  |||||||||||||||||||||||| ||    
T  18747612 ccggtgcactaaagctcccgcatacgcagggttcaggaaggggtcccaccaattg--gtgtattatacgcagccttaccctgcttttttacacaaaaggc 18747515  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 11617592 - 11617689
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||| | ||||||||||||||| | |||||  ||  |||||  ||| |||||||||||||| |||||||||| |||||||||||    
T  11617592 ggcaacccggtgcactaaaggtcctgcatacgcagggtccaggaaggggtcccacca--tttggtgtattgtacgcagtcttaccctg-ttttttacaca 11617688  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 22698977 - 22699071
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtc--accattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    ||||||||||| |||| | |||||| |||||| |||||| ||| |||  ||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  22698977 ccggtgcactatagctcccgcatacacagggtccgggaa-aagggtcccaccatttttggtgtattgtacgcagtcttaccctg-ttttttacacaa 22699071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 47716597 - 47716471
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| ||||||||| |||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||    
T  47716597 taaagggcaacccggtgcaccaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-tttttt 47716499  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    |||||| | |||| ||  ||||||||||    
T  47716498 acacaagaggctgtttccaggacttgaa 47716471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 33500621 - 33500559
Alignment:
Q  248 gcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctg 310  Q
    ||||||||||||| |||||||  ||  ||||||||||||||||| ||||||| ||||||||||    
T  33500621 gcatacgcagggtccgggaaggggtcccaccattttttgtgtatagtacgcagtcttaccctg 33500559  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 42805657 - 42805536
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||| || |||| |||||||  ||  ||||||| || ||||||||||| ||  ||||||||| |||||||||||    
T  42805657 ggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacacagccttaccctg-ttttttacaca 42805559  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  42805558 agaggctgtttccaggacttgaa 42805536  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 1408588 - 1408543
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||    
T  1408588 ggcaatccggtgaactaaagattctgcatacgcagggtccgggaag 1408543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 35334826 - 35334915
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    |||||||||||||||| ||||||||||||||| |||||||  ||  |||||  ||  ||||||||||| || |||||||||| ||||||||||    
T  35334826 ccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccacca--ttcggtgtattgtacacagtcttaccctg-ttttttacac 35334915  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 38262200 - 38262245
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||    
T  38262200 ggcaatccggtgcactaaagctcccgcatacgcagtgttcgggaag 38262245  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 21566561 - 21566469
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||||||| | ||||| |||||||||||||||  ||   |||| |||| |||||||||||||| |||| | ||| ||||||||||||    
T  21566561 ccggtgcactaaagctcccgcatatgcagggttcgggaaggggtcctacca-ttttggtgtattgtacgcagtcttcctctg-ttttttacacaa 21566469  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 23231681 - 23231643
Alignment:
Q  230 cggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  23231681 cggtgcactaaagctgccgcatacgcagggttcgggaag 23231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Original strand, 2541029 - 2541142
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagc 328  Q
    |||||||||||||||| | ||||||||||||  |||||||  ||  |||||  ||| |||||| |||||||  ||||||||| |||||||||||| | ||    
T  2541029 ccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccacca--tttggtgtatagtacgcagccttaccctg-ttttttacacaagaggc 2541125  T
Q  329 tgcttttaggacttgaa 345  Q
    || ||  ||||||||||    
T  2541126 tgtttccaggacttgaa 2541142  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 7879769 - 7879672
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||| ||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||| || |||||||||||    
T  7879769 ggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccttg-ttttttacaca 7879673  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 42391104 - 42391221
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| ||||||||||| |||| | ||||| ||||||| |||||||  ||  |||||  ||| ||||||||||||||  |||||||||   |||||||||    
T  42391104 ggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttaccctg---ttttacaca 42391198  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | |||||| ||  ||||||||||    
T  42391199 agaagctgtttccaggacttgaa 42391221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 375
Target Start/End: Complemental strand, 43557606 - 43557459
Alignment:
Q  223 ggcaatccggtgcactaaa-gcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    ||||| ||||||||||||| ||| | |||||||||| || ||||| |  ||  ||||||| || ||||||||||||||  ||||| ||| ||||||||||    
T  43557606 ggcaacccggtgcactaaaagctcccgcatacgcagagtccgggagggggtcccaccattattggtgtattgtacgcagccttactctg-ttttttacac 43557508  T
Q  322 aaaaagctgcttttaggacttgaatccgacccatgacctttcggtcacttgaca 375  Q
    || | |||| ||  ||||||||||     ||||||||||||| ||||| |||||    
T  43557507 aagaggctgtttccaggacttgaa-----cccatgacctttcagtcacatgaca 43557459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 7645031 - 7644968
Alignment:
Q  281 tttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctgcttttaggacttgaa 345  Q
    |||| ||||||||||||| ||||||||||| |||||||||||| | |||| ||  ||||||||||    
T  7645031 ttttggtgtattgtacgctatcttaccctg-ttttttacacaagaggctgtttccaggacttgaa 7644968  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 14099033 - 14099109
Alignment:
Q  246 ctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaa 325  Q
    ||||||||| |||||||||||||  ||  |||||  ||| |||||||||||||| ||||| |||| ||||||||||||||    
T  14099033 ctgcatacgtagggttcgggaaggggtcccacca--tttggtgtattgtacgcagtcttaacctg-ttttttacacaaaa 14099109  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 14409050 - 14409126
Alignment:
Q  246 ctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaa 325  Q
    ||||||||| |||||||||||||  ||  |||||  ||| |||||||||||||| ||||| |||| ||||||||||||||    
T  14409050 ctgcatacgtagggttcgggaaggggtcccacca--tttggtgtattgtacgcagtcttaacctg-ttttttacacaaaa 14409126  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 29355859 - 29355980
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||| |||||||    
T  29355859 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-tttcttacaca 29355957  T
Q  323 aaaagctgcttttaggacttgaa 345  Q
    | | |||| ||  ||||||||||    
T  29355958 agaggctgtttccaggacttgaa 29355980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 12221918 - 12222018
Alignment:
Q  223 ggcaatccggtgcactaaa-gcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacac 321  Q
    ||||| ||||||||||||| ||| | ||||||||||||| |||||||  ||  ||||||| || ||||||||||||||  ||||||||| ||||||||||    
T  12221918 ggcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctg-ttttttacac 12222016  T
Q  322 aa 323  Q
    ||    
T  12222017 aa 12222018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 12886044 - 12885968
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgca 299  Q
    ||||| |||||||||||||||| |  ||||||||||||  ||||||  ||  |||||||||||||||||||||||||    
T  12886044 ggcaacccggtgcactaaagctcccacatacgcagggtctgggaaggggtcccaccattttttgtgtattgtacgca 12885968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 9161247 - 9161135
Alignment:
Q  231 ggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaaaaagctg 330  Q
    |||||||||||||||| ||||||||||||| || ||||  ||  ||||||| ||  |||||||||||||  ||||| |||  ||||||||||| | ||||    
T  9161247 ggtgcactaaagcttccgcatacgcagggtccgagaaggggtcccaccattattgatgtattgtacgcagccttactctg--tttttacacaagaggctg 9161150  T
Q  331 cttttaggacttgaa 345  Q
     ||  ||||||||||    
T  9161149 tttccaggacttgaa 9161135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 17432484 - 17432393
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccct 309  Q
    |||| ||||| |||||||||||||||| | |||| | |||| | |||||| | || ||||||||||| ||||||||||| ||  ||||||||    
T  17432484 taaagggcaacccggtgcactaaagctcccgcatgcacaggatccgggaaaaggtctcaccatttttagtgtattgtacacagccttaccct 17432393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 3815087 - 3815125
Alignment:
Q  229 ccggtgcactaaagcttctgcatacgcagggttcgggaa 267  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  3815087 ccggtgcactaaagcttccgcatacgtagggttcgggaa 3815125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 3116133 - 3116209
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgca 299  Q
    |||||||||||| ||||||||| | ||||||||| ||| || ||||  ||  |||||||||| ||||||||| ||||    
T  3116133 ggcaatccggtgtactaaagctcccgcatacgcaaggtccgagaaggggtcccaccatttttggtgtattgtgcgca 3116209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 59115 - 58989
Alignment:
Q  218 taaatggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgctttttt 317  Q
    |||| ||||| ||| |||||||||||| | |||||||||| ||  ||||||  ||  |||||||||| |||||||||||||| |||||||||| ||||||    
T  59115 taaagggcaacccgatgcactaaagctcccgcatacgcagagtctgggaaggggtcccaccatttttggtgtattgtacgcagtcttaccctg-tttttt 59017  T
Q  318 acacaaaaagctgcttttaggacttgaa 345  Q
    | |||| | |||| ||  ||||||||||    
T  59016 atacaagaggctgtttccaggacttgaa 58989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 46962 - 46865
Alignment:
Q  223 ggcaatccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacaca 322  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||  ||  |||||  ||| ||||||||||||||| ||||||||  |||||||||||    
T  46962 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca--tttggtgtattgtacgcaaccttaccct-attttttacaca 46866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 24786 - 24873
Alignment:
Q  233 tgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttgtgtattgtacgcaatcttaccctgcttttttacacaa 323  Q
    |||||||||||| | |||||||||||||||||||||  ||  |||||  ||| |||| |||||||||  ||||||||| ||||||||||||    
T  24786 tgcactaaagctcccgcatacgcagggttcgggaaggggtcccacca--tttggtgtgttgtacgcagccttaccctg-ttttttacacaa 24873  T

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Target: scaffold0954 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 3668 - 3630
Alignment:
Q  230 cggtgcactaaagcttctgcatacgcagggttcgggaag 268  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  3668 cggtgcactaaagctgccgcatacgcagggttcgggaag 3630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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