View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19043_high_20 (Length: 234)

Name: NF19043_high_20
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19043_high_20
NF19043_high_20
[»] chr8 (9 HSPs)
chr8 (73-232)||(30356245-30356404)
chr8 (15-53)||(30356214-30356252)
chr8 (25-64)||(7924631-7924670)
chr8 (25-64)||(8300048-8300087)
chr8 (25-64)||(13396633-13396672)
chr8 (25-64)||(41665225-41665264)
chr8 (25-63)||(17659076-17659114)
chr8 (25-61)||(4987924-4987960)
chr8 (15-63)||(35029457-35029505)
[»] chr6 (9 HSPs)
chr6 (25-63)||(9199109-9199147)
chr6 (25-61)||(5085885-5085921)
chr6 (25-64)||(21168444-21168483)
chr6 (25-63)||(649923-649961)
chr6 (25-63)||(18051306-18051344)
chr6 (25-63)||(26513969-26514007)
chr6 (15-115)||(900660-900759)
chr6 (25-61)||(19255885-19255921)
chr6 (25-61)||(33640163-33640199)
[»] chr7 (8 HSPs)
chr7 (15-63)||(47923930-47923978)
chr7 (25-64)||(4937984-4938023)
chr7 (25-64)||(11277108-11277147)
chr7 (21-108)||(29916348-29916435)
chr7 (15-63)||(11338982-11339030)
chr7 (15-63)||(27601779-27601827)
chr7 (25-61)||(27941353-27941389)
chr7 (25-61)||(45992821-45992857)
[»] chr5 (4 HSPs)
chr5 (25-61)||(11574553-11574589)
chr5 (25-64)||(30732170-30732209)
chr5 (25-64)||(42513965-42514004)
chr5 (15-63)||(23923084-23923132)
[»] chr3 (9 HSPs)
chr3 (25-61)||(27924925-27924961)
chr3 (25-64)||(2364522-2364561)
chr3 (25-64)||(7313021-7313060)
chr3 (25-64)||(10323427-10323466)
chr3 (21-64)||(31547612-31547655)
chr3 (25-64)||(34332671-34332710)
chr3 (25-63)||(19920086-19920124)
chr3 (25-63)||(47537513-47537551)
chr3 (22-63)||(50544466-50544507)
[»] scaffold0034 (1 HSPs)
scaffold0034 (25-64)||(105699-105738)
[»] chr4 (13 HSPs)
chr4 (25-64)||(15740466-15740505)
chr4 (25-64)||(23642447-23642486)
chr4 (25-64)||(47419049-47419088)
chr4 (25-63)||(4640536-4640574)
chr4 (25-63)||(20395841-20395879)
chr4 (25-63)||(42778483-42778521)
chr4 (25-63)||(53486810-53486848)
chr4 (27-64)||(1828396-1828433)
chr4 (25-58)||(8935320-8935353)
chr4 (25-61)||(19647954-19647990)
chr4 (25-57)||(20544329-20544361)
chr4 (25-61)||(23657640-23657676)
chr4 (25-61)||(29553599-29553635)
[»] chr1 (7 HSPs)
chr1 (25-64)||(6050848-6050887)
chr1 (25-64)||(11908961-11909000)
chr1 (25-64)||(35541294-35541333)
chr1 (14-64)||(3073984-3074034)
chr1 (25-63)||(17708224-17708262)
chr1 (25-63)||(30110782-30110820)
chr1 (25-61)||(25504852-25504888)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-63)||(182374-182412)
[»] chr2 (3 HSPs)
chr2 (25-63)||(1380327-1380365)
chr2 (25-58)||(22725296-22725329)
chr2 (25-61)||(15017921-15017957)
[»] scaffold0112 (1 HSPs)
scaffold0112 (25-61)||(15509-15545)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 30356245 - 30356404
Alignment:
Q  73 cctcccaagcctcaccctcttcatcccagcctaaagagaacatttcagccaccgtactcaaactattaacagacaaatcaaaaagtctcctaaaatgcac 172  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  30356245 cctcccaaacctcaccctcttcatcccaacctaaagagaacatttcagccaccgtactcaaactattaacagacagatcaaaaagtctcataaaatgcac 30356344  T
Q  173 acacagagagtcgatctaaccacggattcgtcccactaccaaacattttccttatattct 232  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||  ||||| ||||||||||    
T  30356345 acacacagagtcgatctaaccacagattcgtcccattaccaactatttttcttatattct 30356404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 30356214 - 30356252
Alignment:
Q  15 agtaacatcatacactcctctaacatctcctcctcccaa 53  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30356214 agtaacatcatacactcctctaacatctcctcctcccaa 30356252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 7924631 - 7924670
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  7924631 tacactcctctaccaactcctcctcccaagcccacaaccg 7924670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 8300048 - 8300087
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  8300048 tacactcctctaccaactcctcctcccaagcccacaaccg 8300087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 13396633 - 13396672
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  13396633 tacactcctctaccaactcctcctcccaagcccacaaccg 13396672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 41665264 - 41665225
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  41665264 tacactcctctaccaactcctcctcccaagcccacaaccg 41665225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 17659076 - 17659114
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  17659076 tacactcctctaactcctcctcctcccaagcccacaacc 17659114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 4987960 - 4987924
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  4987960 tacactccactaacatctcctcctcccacgcccacaa 4987924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 35029457 - 35029505
Alignment:
Q  15 agtaacatcatacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||| || ||||||||| |||||||||||||||||||  |||||||||    
T  35029457 agtaaaataatacactcccctaacatctcctcctcccacacccacaacc 35029505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 9199147 - 9199109
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9199147 tacactcctctaacttctcctcctcccaagcccacaacc 9199109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 5085921 - 5085885
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||||||||||||||||||||||| ||||||||    
T  5085921 tacactcctctaacatctcctcctcccacgcccacaa 5085885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 21168444 - 21168483
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  21168444 tacactcctctaccaactcctcctcccaagcccacaaccg 21168483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 649961 - 649923
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  649961 tacactcctctaactcctcctcctcccaagcccacaacc 649923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 18051344 - 18051306
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  18051344 tacactcctctaactcctcctcctcccaagcccacaacc 18051306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 26513969 - 26514007
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26513969 tacactcctctaccaactcctcctcccaagcccacaacc 26514007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 900759 - 900660
Alignment:
Q  15 agtaacatcatacactcctctaacatctcctcctcccaagcccacaaccgacggtgtccctcccaagcctcaccctcttcatcccagcctaaagagaaca 114  Q
    ||||||| | |||||||| |||||| ||| |||||||| ||||||||||  |  | || || ||| ||||||||| || ||||||||||||| |||||||    
T  900759 agtaacaacctacactccgctaacaactcatcctcccacgcccacaacctcctctttcactgccacgcctcaccccct-catcccagcctaacgagaaca 900661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19255885 - 19255921
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  19255885 tacactccactaacatctcctcctcccacgcccacaa 19255921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 33640163 - 33640199
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  33640163 tacactccactaacatctcctcctcccacgcccacaa 33640199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 47923930 - 47923978
Alignment:
Q  15 agtaacatcatacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    |||||| |||||||||||||||||||||| ||||||||  |||||||||    
T  47923930 agtaacgtcatacactcctctaacatctcttcctcccacacccacaacc 47923978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 4938023 - 4937984
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  4938023 tacactcctctaccaactcctcctcccaagcccacaaccg 4937984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 11277147 - 11277108
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  11277147 tacactcctctaccaactcctcctcccaagcccacaaccg 11277108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 29916348 - 29916435
Alignment:
Q  21 atcatacactcctctaacatctcctcctcccaagcccacaaccgacggtgtccctcccaagcctcaccctcttcatcccagcctaaag 108  Q
    ||||||||||||  ||||| ||| |||||||| |||||||||||||| || | || ||||||| | || ||||| ||||| |||||||    
T  29916348 atcatacactcccttaacaactcatcctcccacgcccacaaccgacgttgccactaccaagccaccccttcttcctcccaccctaaag 29916435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 11338982 - 11339030
Alignment:
Q  15 agtaacatcatacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||| | |||||||||||| ||| ||||||||||| ||||||||||    
T  11338982 agtaacaacctacactcctctaccatttcctcctcccacgcccacaacc 11339030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 27601827 - 27601779
Alignment:
Q  15 agtaacatcatacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||| ||| |||||||| ||||| ||||||||||||| ||||||||||    
T  27601827 agtaaaatcttacactcccctaacttctcctcctcccacgcccacaacc 27601779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 27941389 - 27941353
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  27941389 tacactcctctaacaactcctcctcccacgcccacaa 27941353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 45992821 - 45992857
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  45992821 tacactccactaacatctcctcctcccacgcccacaa 45992857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11574589 - 11574553
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11574589 tacactcctctaacatctcctcctcccacgcccacaa 11574553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 30732209 - 30732170
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  30732209 tacactcctctaccaactcctcctcccaagcccacaaccg 30732170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 42513965 - 42514004
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  42513965 tacactcctctaccaactcctcctcccaagcccacaaccg 42514004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 23923084 - 23923132
Alignment:
Q  15 agtaacatcatacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||| | |||||||| |||||||||||||||||||  |||||||||    
T  23923084 agtaacaacctacactccgctaacatctcctcctcccacacccacaacc 23923132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 27924961 - 27924925
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27924961 tacactcctctaacacctcctcctcccaagcccacaa 27924925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 2364522 - 2364561
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  2364522 tacactcctctaccaactcctcctcccaagcccacaaccg 2364561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 7313021 - 7313060
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  7313021 tacactcctctaccaactcctcctcccaagcccacaaccg 7313060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 10323466 - 10323427
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  10323466 tacactcctctaccaactcctcctcccaagcccacaaccg 10323427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 31547612 - 31547655
Alignment:
Q  21 atcatacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| |||||| |||||||||||| |||||||||||    
T  31547612 atcatacactcccctaacaactcctcctcccatgcccacaaccg 31547655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 34332710 - 34332671
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  34332710 tacactcctctaccaactcctcctcccaagcccacaaccg 34332671  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 19920124 - 19920086
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    |||||||||||| || |||||||||||||||||||||||    
T  19920124 tacactcctctaccaactcctcctcccaagcccacaacc 19920086  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 47537513 - 47537551
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  47537513 tacactcctctaactcctcctcctcccaagcccacaacc 47537551  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 50544466 - 50544507
Alignment:
Q  22 tcatacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  50544466 tcatacactcctctaactcctcttcctcccaagcccacaacc 50544507  T

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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 105738 - 105699
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  105738 tacactcctctaccaactcctcctcccaagcccacaaccg 105699  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 15740466 - 15740505
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  15740466 tacactcctctaccaactcctcctcccaagcccacaaccg 15740505  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 23642486 - 23642447
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  23642486 tacactcctctaccaactcctcctcccaagcccacaaccg 23642447  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 47419049 - 47419088
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  47419049 tacactcctctaccacctcctcctcccaagcccacaaccg 47419088  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 4640574 - 4640536
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  4640574 tacactcctctaacaagtcctcctcccaagcccacaacc 4640536  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 20395841 - 20395879
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  20395841 tacactcctctaactcctcctcctcccaagcccacaacc 20395879  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 42778483 - 42778521
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  42778483 tacactcctctaactcctcctcctcccaagcccacaacc 42778521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 53486848 - 53486810
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  53486848 tacactcctctaactcctcctcctcccaagcccacaacc 53486810  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 1828433 - 1828396
Alignment:
Q  27 cactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||| || ||||||||||||||||||||||||    
T  1828433 cactcctctaccaactcctcctcccaagcccacaaccg 1828396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 8935320 - 8935353
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagccca 58  Q
    |||||||||||||||||||||||||||| |||||    
T  8935320 tacactcctctaacatctcctcctcccacgccca 8935353  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19647954 - 19647990
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  19647954 tacactccactaacatctcctcctcccacgcccacaa 19647990  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 20544329 - 20544361
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagccc 57  Q
    |||||||||||||||||||||||||||| ||||    
T  20544329 tacactcctctaacatctcctcctcccacgccc 20544361  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 23657640 - 23657676
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  23657640 tacactcctctaacaactcctcctcccacgcccacaa 23657676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 29553635 - 29553599
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  29553635 tacactcctctaacaactcctcctcccacgcccacaa 29553599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 6050848 - 6050887
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  6050848 tacactcctctaccaactcctcctcccaagcccacaaccg 6050887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 11909000 - 11908961
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  11909000 tacactcctctaccaactcctcctcccaagcccacaaccg 11908961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 35541294 - 35541333
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  35541294 tacactcctctaccaactcctcctcccaagcccacaaccg 35541333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 3073984 - 3074034
Alignment:
Q  14 cagtaacatcatacactcctctaacatctcctcctcccaagcccacaaccg 64  Q
    |||||| ||| |||||||| |||||| |||||||||||| |||||||||||    
T  3073984 cagtaaaatcctacactcccctaacaactcctcctcccaggcccacaaccg 3074034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 17708224 - 17708262
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  17708224 tacactcctctaactcctcctcctcccaagcccacaacc 17708262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 30110820 - 30110782
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  30110820 tacactcctctaactcctcctcctcccaagcccacaacc 30110782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 25504888 - 25504852
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  25504888 tacactccactaacatctcctcctcccacgcccacaa 25504852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 182374 - 182412
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  182374 tacactcctctaactcctcctcctcccaagcccacaacc 182412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 1380327 - 1380365
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaacc 63  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  1380327 tacactcctctaactcctcctcctcccaagcccacaacc 1380365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 22725329 - 22725296
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagccca 58  Q
    ||||||||||||||||||||||||||||| ||||    
T  22725329 tacactcctctaacatctcctcctcccaaaccca 22725296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 15017921 - 15017957
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    ||||||||||||||||||||||||||||  |||||||    
T  15017921 tacactcctctaacatctcctcctcccacacccacaa 15017957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 15545 - 15509
Alignment:
Q  25 tacactcctctaacatctcctcctcccaagcccacaa 61  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  15545 tacactcctctaacatatcctcctcccacgcccacaa 15509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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