View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19043_high_21 (Length: 230)

Name: NF19043_high_21
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19043_high_21
NF19043_high_21
[»] chr7 (32 HSPs)
chr7 (1-66)||(7389386-7389451)
chr7 (1-65)||(40957705-40957769)
chr7 (1-64)||(36361951-36362014)
chr7 (1-63)||(4999552-4999614)
chr7 (1-63)||(19329842-19329904)
chr7 (2-63)||(35137533-35137594)
chr7 (1-65)||(8080421-8080485)
chr7 (1-65)||(10343601-10343665)
chr7 (1-65)||(19436225-19436289)
chr7 (5-64)||(3434561-3434620)
chr7 (1-60)||(3783998-3784057)
chr7 (1-64)||(36362025-36362088)
chr7 (1-63)||(38267040-38267102)
chr7 (5-69)||(36208167-36208231)
chr7 (1-65)||(38837215-38837279)
chr7 (1-64)||(22343360-22343423)
chr7 (2-65)||(35468894-35468957)
chr7 (1-58)||(35522881-35522938)
chr7 (7-63)||(31735884-31735940)
chr7 (1-65)||(38044195-38044259)
chr7 (1-63)||(8238212-8238275)
chr7 (14-65)||(11044186-11044237)
chr7 (2-65)||(18207178-18207241)
chr7 (1-64)||(41915740-41915803)
chr7 (1-64)||(46033839-46033902)
chr7 (1-63)||(39255961-39256023)
chr7 (1-63)||(46374840-46374902)
chr7 (1-60)||(3694370-3694429)
chr7 (4-63)||(21234401-21234460)
chr7 (1-63)||(32564464-32564526)
chr7 (1-62)||(32045838-32045899)
chr7 (2-63)||(40846152-40846213)
[»] chr6 (16 HSPs)
chr6 (1-65)||(6209503-6209567)
chr6 (1-63)||(17598554-17598616)
chr6 (1-63)||(32869678-32869740)
chr6 (1-60)||(22880696-22880755)
chr6 (1-67)||(15990080-15990146)
chr6 (1-65)||(30341398-30341462)
chr6 (1-64)||(11427615-11427680)
chr6 (1-63)||(15508062-15508124)
chr6 (1-63)||(29857827-29857889)
chr6 (1-63)||(31109438-31109500)
chr6 (4-65)||(15832575-15832636)
chr6 (1-64)||(31976247-31976310)
chr6 (1-63)||(31953068-31953130)
chr6 (1-65)||(12732480-12732544)
chr6 (1-59)||(28536524-28536582)
chr6 (11-65)||(31110807-31110861)
[»] chr8 (29 HSPs)
chr8 (1-67)||(14547918-14547984)
chr8 (1-63)||(504159-504221)
chr8 (1-63)||(40423981-40424043)
chr8 (1-64)||(44507125-44507188)
chr8 (1-63)||(1179978-1180040)
chr8 (1-63)||(12831047-12831109)
chr8 (1-63)||(15197333-15197395)
chr8 (1-63)||(23122635-23122697)
chr8 (4-63)||(20074975-20075034)
chr8 (4-63)||(34012337-34012396)
chr8 (1-64)||(37038478-37038541)
chr8 (1-62)||(5957831-5957892)
chr8 (4-65)||(10284672-10284733)
chr8 (1-65)||(16383375-16383439)
chr8 (1-65)||(34307214-34307278)
chr8 (1-66)||(4854901-4854966)
chr8 (1-58)||(10621125-10621182)
chr8 (1-66)||(24307831-24307896)
chr8 (1-65)||(24307627-24307691)
chr8 (8-64)||(25838196-25838252)
chr8 (1-63)||(15048220-15048281)
chr8 (1-63)||(30479512-30479574)
chr8 (2-63)||(14055631-14055692)
chr8 (2-63)||(43414620-43414681)
chr8 (26-62)||(9122196-9122232)
chr8 (1-65)||(42221513-42221577)
chr8 (1-64)||(17443824-17443887)
chr8 (1-64)||(32032724-32032786)
chr8 (2-44)||(8841471-8841513)
[»] chr2 (28 HSPs)
chr2 (1-67)||(9058476-9058542)
chr2 (2-65)||(33436139-33436202)
chr2 (1-67)||(10249420-10249486)
chr2 (1-63)||(40701478-40701540)
chr2 (1-64)||(7465773-7465836)
chr2 (1-60)||(28863458-28863517)
chr2 (1-64)||(32505686-32505749)
chr2 (1-63)||(17473020-17473082)
chr2 (1-63)||(28381693-28381755)
chr2 (1-65)||(30915461-30915525)
chr2 (1-64)||(5574526-5574589)
chr2 (1-60)||(19930858-19930917)
chr2 (1-63)||(4060685-4060747)
chr2 (1-63)||(13438343-13438405)
chr2 (1-63)||(27864704-27864766)
chr2 (1-63)||(40613940-40614002)
chr2 (1-65)||(38882852-38882915)
chr2 (1-64)||(33436210-33436273)
chr2 (1-65)||(20700813-20700877)
chr2 (1-65)||(26891542-26891606)
chr2 (1-65)||(42257191-42257255)
chr2 (2-57)||(3439985-3440040)
chr2 (1-63)||(43490121-43490183)
chr2 (1-66)||(17823781-17823846)
chr2 (1-45)||(2997525-2997569)
chr2 (1-65)||(38273180-38273244)
chr2 (1-63)||(17820042-17820104)
chr2 (1-65)||(45097773-45097837)
[»] chr3 (27 HSPs)
chr3 (1-66)||(11095391-11095456)
chr3 (1-66)||(54868933-54868998)
chr3 (1-65)||(49607412-49607476)
chr3 (1-63)||(53982011-53982073)
chr3 (1-65)||(36707462-36707526)
chr3 (1-63)||(33644200-33644262)
chr3 (1-58)||(52629305-52629362)
chr3 (1-65)||(27714929-27714993)
chr3 (1-64)||(17470404-17470467)
chr3 (4-66)||(33118892-33118954)
chr3 (1-59)||(48587129-48587187)
chr3 (2-63)||(8076393-8076454)
chr3 (1-62)||(31456690-31456751)
chr3 (4-64)||(35536625-35536685)
chr3 (1-64)||(24699992-24700055)
chr3 (1-63)||(14623877-14623939)
chr3 (1-63)||(26141570-26141632)
chr3 (1-63)||(20764953-20765015)
chr3 (145-187)||(31697746-31697788)
chr3 (4-66)||(41189805-41189867)
chr3 (1-58)||(26754700-26754757)
chr3 (4-64)||(8956761-8956821)
chr3 (1-65)||(11347960-11348024)
chr3 (4-59)||(30801774-30801829)
chr3 (1-63)||(45058591-45058652)
chr3 (1-66)||(11907368-11907433)
chr3 (1-62)||(13898093-13898154)
[»] chr1 (26 HSPs)
chr1 (1-65)||(2581913-2581977)
chr1 (1-63)||(9474914-9474976)
chr1 (1-63)||(48716320-48716382)
chr1 (1-65)||(8346426-8346490)
chr1 (1-63)||(3000319-3000381)
chr1 (1-63)||(27564773-27564835)
chr1 (1-63)||(37649198-37649260)
chr1 (2-63)||(47452359-47452420)
chr1 (1-65)||(38595152-38595216)
chr1 (1-65)||(38632359-38632423)
chr1 (1-64)||(50630457-50630520)
chr1 (1-64)||(51898721-51898784)
chr1 (1-66)||(45044598-45044663)
chr1 (1-65)||(23597129-23597193)
chr1 (1-65)||(32813245-32813309)
chr1 (1-60)||(44548414-44548473)
chr1 (1-67)||(26274428-26274494)
chr1 (1-67)||(49811565-49811631)
chr1 (1-63)||(50591038-50591100)
chr1 (1-65)||(5959038-5959102)
chr1 (1-64)||(41758804-41758867)
chr1 (1-64)||(37926476-37926539)
chr1 (1-63)||(43132-43194)
chr1 (1-63)||(41608531-41608593)
chr1 (1-63)||(47748443-47748504)
chr1 (1-62)||(11152416-11152476)
[»] chr4 (28 HSPs)
chr4 (2-65)||(29239884-29239947)
chr4 (1-63)||(3481654-3481716)
chr4 (1-63)||(6034044-6034106)
chr4 (1-67)||(48183087-48183153)
chr4 (2-63)||(54473572-54473633)
chr4 (1-65)||(480485-480549)
chr4 (1-65)||(50052466-50052530)
chr4 (1-63)||(11511500-11511562)
chr4 (1-63)||(41236347-41236409)
chr4 (1-66)||(23608232-23608297)
chr4 (1-68)||(55475186-55475253)
chr4 (1-63)||(31910192-31910254)
chr4 (1-63)||(50526209-50526271)
chr4 (1-65)||(42044405-42044469)
chr4 (1-63)||(40574779-40574841)
chr4 (1-65)||(19670754-19670818)
chr4 (1-64)||(29234283-29234346)
chr4 (1-67)||(29977881-29977947)
chr4 (1-63)||(55079752-55079814)
chr4 (4-65)||(24995148-24995209)
chr4 (1-66)||(29547997-29548062)
chr4 (1-45)||(17983781-17983825)
chr4 (1-65)||(32766956-32767020)
chr4 (4-67)||(47104540-47104603)
chr4 (1-64)||(47986207-47986270)
chr4 (1-64)||(50813930-50813993)
chr4 (1-63)||(18924533-18924595)
chr4 (1-58)||(53352604-53352660)
[»] chr5 (24 HSPs)
chr5 (1-63)||(35785199-35785261)
chr5 (1-65)||(13811650-13811714)
chr5 (1-65)||(18520922-18520986)
chr5 (1-65)||(36732980-36733044)
chr5 (1-64)||(2740273-2740336)
chr5 (1-63)||(35943930-35943992)
chr5 (4-62)||(36875644-36875702)
chr5 (4-63)||(33149679-33149738)
chr5 (1-63)||(14831814-14831876)
chr5 (1-63)||(28177775-28177837)
chr5 (1-63)||(40145407-40145469)
chr5 (1-63)||(42414340-42414402)
chr5 (1-66)||(15409648-15409713)
chr5 (1-65)||(3921303-3921367)
chr5 (1-64)||(6679697-6679760)
chr5 (1-64)||(2252206-2252269)
chr5 (1-63)||(33825362-33825424)
chr5 (1-66)||(39688935-39689000)
chr5 (1-58)||(10356639-10356697)
chr5 (1-63)||(26720516-26720578)
chr5 (1-63)||(26990265-26990327)
chr5 (1-66)||(9603810-9603875)
chr5 (1-62)||(16327902-16327963)
chr5 (1-65)||(31008986-31009050)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-63)||(4029-4091)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-65)||(10147-10211)
[»] scaffold1268 (1 HSPs)
scaffold1268 (5-63)||(971-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (5-63)||(971-1029)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-45)||(152516-152560)


Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7389451 - 7389386
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  7389451 cagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactctta 7389386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40957769 - 40957705
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||    
T  40957769 cagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36361951 - 36362014
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||    
T  36361951 cagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4999552 - 4999614
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||    
T  4999552 cagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19329904 - 19329842
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||| | |||||||||||||||||    
T  19329904 cagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 35137594 - 35137533
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||    
T  35137594 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8080421 - 8080485
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||| ||| |||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  8080421 cagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10343601 - 10343665
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||   ||||||| |||||||||||| |||||||||||||||||||    
T  10343601 cagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19436225 - 19436289
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  |||||||| ||||||||| | |||||||||||||||||||    
T  19436225 cagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 3434620 - 3434561
Alignment:
Q  5 tttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||  |||||||||||||||||| | ||||||||||||||||||    
T  3434620 tttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3784057 - 3783998
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatta 60  Q
    |||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||    
T  3784057 cagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36362088 - 36362025
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||   |||||| |||||||||||| ||||||||||||||||||    
T  36362088 cagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38267102 - 38267040
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||| ||| ||||||| |||||||||||||||||    
T  38267102 cagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 36208231 - 36208167
Alignment:
Q  5 tttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttatgc 69  Q
    ||||||||||||||||||  | |||||| |||||||||||| |||||||||||| ||||||||||    
T  36208231 tttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactcttatgc 36208167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38837279 - 38837215
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||| |||||  ||  |||||||||||||||||||| |||||||||||||||||||    
T  38837279 cagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22343423 - 22343360
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| |||||    
T  22343423 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 35468894 - 35468957
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||| ||||||||||||||  |||||||||| |||||| | |||||||||||||||||||    
T  35468894 agatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35522938 - 35522881
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcat 58  Q
    ||||||||||||||||||| |||| |||||||||||| ||||| | ||||||||||||    
T  35522938 cagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 31735940 - 31735884
Alignment:
Q  7 tttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||| ||| ||||||||||||||||||| | |||||||||||| ||||    
T  31735940 tttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactc 31735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38044259 - 38044195
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||| ||||||   |||||||||||||||||||| | |||||||||| ||||||    
T  38044259 cagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8238275 - 8238212
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccaccta-agggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||| | |||||||||| ||||    
T  8238275 cagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 11044237 - 11044186
Alignment:
Q  14 gggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||   ||||||||||||||||||| |||||||||||||||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 18207241 - 18207178
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||| ||||||||||   |||||||||||||||||| | |||||||||||| ||||||    
T  18207241 agatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctt 18207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41915803 - 41915740
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||| ||||||||   |||||||||||||||||||| | |||||||||| |||||    
T  41915803 cagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46033839 - 46033902
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||| ||||||||| |||  |||||||||||||||||  |||||||||||||| |||||    
T  46033839 cagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39255961 - 39256023
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||| ||||| |||| | |||||||||||||||||| | |||||||||||| ||||    
T  39255961 cagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46374840 - 46374902
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||| |||  |||| ||||||||||||| | |||||||||||| ||||    
T  46374840 cagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3694429 - 3694370
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatta 60  Q
    ||||||||||||||||||| |||  |||||||| ||||||||||| | ||| ||||||||    
T  3694429 cagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcatta 3694370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 21234460 - 21234401
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||| ||||||||  |||||||| ||||||||| | |||||||||||| ||||    
T  21234460 atttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32564464 - 32564526
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||   |||||||||||||||||  | | |||||||||| ||||    
T  32564464 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32045899 - 32045838
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattact 62  Q
    ||||||||| |||||||||| | || | ||||||||||||||  ||| ||||||||||||||    
T  32045899 cagatttttatgtgggtgtccagtaatatattgccacctaagaatatatatgtatcattact 32045838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 40846152 - 40846213
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||| ||||||   |||||||||||||||||| | | |||||||||| ||||    
T  40846152 agatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6209503 - 6209567
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6209503 cagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17598616 - 17598554
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||    
T  17598616 cagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32869740 - 32869678
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||| ||||||    
T  32869740 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22880696 - 22880755
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatta 60  Q
    |||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  22880696 cagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15990080 - 15990146
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| ||||||||    
T  15990080 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcttat 15990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30341398 - 30341462
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| ||||||    
T  30341398 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 30341462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11427680 - 11427615
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccaccta--agggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||   ||||||||||||||  ||||| ||||||||||||||||||    
T  11427680 cagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactct 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15508062 - 15508124
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| ||||    
T  15508062 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29857889 - 29857827
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||| |||  ||||||||||| |||| ||| |||||||||||||||||    
T  29857889 cagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31109438 - 31109500
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| |||||  ||||||||||    
T  31109438 cagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 15832636 - 15832575
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||  | ||||| ||||||| ||| |||||||||||||||||||    
T  15832636 atttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactctt 15832575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31976310 - 31976247
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||||||| |||  || ||||||||||||||| | |||||||||||| |||||    
T  31976310 cagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31953068 - 31953130
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| ||||||||||||   |||||||||||||||||| | ||||| |||||||||||    
T  31953068 cagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12732544 - 12732480
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||  | | ||||||||| ||||  | |||||||||||||||||||    
T  12732544 cagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactctt 12732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28536524 - 28536582
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatt 59  Q
    ||||||||||||||||||||||    ||||||||||||||||| | | |||||||||||    
T  28536524 cagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 31110807 - 31110861
Alignment:
Q  11 tgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||| ||||||||  |||||||||||||||||| | |||||||||||| ||||||    
T  31110807 tgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14547984 - 14547918
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  14547984 cagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactcttat 14547918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 504159 - 504221
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  504159 cagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40423981 - 40424043
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  40423981 cagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44507125 - 44507188
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||    
T  44507125 cagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1179978 - 1180040
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||    
T  1179978 cagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12831109 - 12831047
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||    
T  12831109 cagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15197395 - 15197333
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||    
T  15197395 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23122635 - 23122697
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  23122635 cagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 20074975 - 20075034
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  20074975 atttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 34012337 - 34012396
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||    
T  34012337 atttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

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Target: chr8; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37038541 - 37038478
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||  |||||||||||||||| | | ||||||||||||||||||    
T  37038541 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 37038478  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5957892 - 5957831
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattact 62  Q
    |||||||||||||||||||||||  |||||||||||||||||  | ||||||||||||||||    
T  5957892 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 10284672 - 10284733
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||| ||||||    
T  10284672 atttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactctt 10284733  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16383439 - 16383375
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| ||||||    
T  16383439 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34307278 - 34307214
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| ||||||    
T  34307278 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

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Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4854901 - 4854966
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||| ||| ||||| |||  |||||||||||||||||| | ||||||||||||||||||||    
T  4854901 cagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactctta 4854966  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10621125 - 10621182
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcat 58  Q
    |||||||||||||||||||||||  ||||||| |||||||||| | ||||||||||||    
T  10621125 cagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24307831 - 24307896
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||||||||||||||    ||||||||||||||||||| | |||||||||| |||||||    
T  24307831 cagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactctta 24307896  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24307691 - 24307627
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||    ||||||||||||||||||| | |||||||||| ||||||    
T  24307691 cagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctt 24307627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 25838252 - 25838196
Alignment:
Q  8 ttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||| |||||| |||||    
T  25838252 ttgtgtggatgtcaaaaagtgtattgccacctaaggatatctatttatcataactct 25838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15048220 - 15048281
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| |||||||  |||||||||||||||||| | |||||||||||| ||||    
T  15048220 cagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30479512 - 30479574
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| ||||| |||||||  |||||||||||||||||||| | |||||||||| ||||    
T  30479512 cagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 14055631 - 14055692
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||| ||||||  ||||||||| ||||||||||| || ||||||||| ||||    
T  14055631 agatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 43414620 - 43414681
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||  |||| |||||| |||||| | |||||||||||| ||||    
T  43414620 agatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 9122232 - 9122196
Alignment:
Q  26 gtgtattgccacctaagggtatctatgtatcattact 62  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9122232 gtgtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42221577 - 42221513
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||| |  | ||||||| ||||||||| | | |||||||||||||||||    
T  42221577 cagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcattactctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17443887 - 17443824
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||| |||| ||  ||||||||| ||||||||| | |||||||||||| |||||    
T  17443887 cagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataactct 17443824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32032786 - 32032724
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||| ||||||  | ||||||||||||||||||| | |||||||||| |||||    
T  32032786 cagatttttgtgtggatgtcaagga-tgtattgccacctaagggtgtttatgtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 8841471 - 8841513
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaaggg 44  Q
    ||||||||||||||||||||||  ||||| |||||||||||||    
T  8841471 agatttttgtgtgggtgtcaaagggtgtactgccacctaaggg 8841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9058542 - 9058476
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  9058542 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttat 9058476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 33436139 - 33436202
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  33436139 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10249420 - 10249486
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||    
T  10249420 cagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcttat 10249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40701540 - 40701478
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  40701540 cagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7465773 - 7465836
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||    
T  7465773 cagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28863517 - 28863458
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatta 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  28863517 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32505686 - 32505749
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||    
T  32505686 cagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17473082 - 17473020
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||    
T  17473082 cagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28381693 - 28381755
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||    
T  28381693 cagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30915525 - 30915461
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||| |||||| ||||||  |||||||||||||||||||| |||||||||||||||||||    
T  30915525 cagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5574526 - 5574589
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||||||||||    
T  5574526 cagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19930858 - 19930917
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatta 60  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||    
T  19930858 cagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4060747 - 4060685
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| |||||||  |||||||| ||||||||||| |||||||||||||||||    
T  4060747 cagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13438405 - 13438343
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||   ||||||| ||||||||||| |||||||||||||||||    
T  13438405 cagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27864766 - 27864704
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| |||||||  |||||||||||| ||||||| |||||||||||||||||    
T  27864766 cagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40613940 - 40614002
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||| | |||||||||||| ||||    
T  40613940 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38882852 - 38882915
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||| |||||||  || ||||||||||||||||| |||||||||||||||||||    
T  38882852 cagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33436273 - 33436210
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||| |||||||||||||  ||||||||||| |||||| | ||||||||||||||||||    
T  33436273 cagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20700877 - 20700813
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||| || ||||||  |||||||||||| ||||| | |||||||||||||||||||    
T  20700877 cagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26891542 - 26891606
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||| |   ||||||||||||||||||||  ||||||||||| ||||||    
T  26891542 cagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactctt 26891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42257255 - 42257191
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||| ||||||||||||||  ||||||||||||||| | | |||||||||||| ||||||    
T  42257255 cagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactctt 42257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 3440040 - 3439985
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatca 57  Q
    ||||||||||||||||||| |  ||||||||||||||||||||| |||| ||||||    
T  3440040 agatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43490183 - 43490121
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||   |||||||| ||||||||||| | |||||||||| ||||    
T  43490183 cagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17823846 - 17823781
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    |||||||||||||||||||  |  | ||||||||||||||||| | | ||||||||||||||||||    
T  17823846 cagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactctta 17823781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2997525 - 2997569
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggt 45  Q
    ||||||||||||||||||||||   ||||||||||||||||||||    
T  2997525 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38273180 - 38273244
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||| |||  ||||||||||| |||||  | |||||||||||| ||||||    
T  38273180 cagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctt 38273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17820042 - 17820104
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||   |||||||||||||||  | | |||||||||||| ||||    
T  17820042 cagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45097773 - 45097837
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||| ||||||||||    ||||||||||||||||| | | |||||||||| ||||||    
T  45097773 cagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctt 45097837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11095391 - 11095456
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  11095391 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 54868933 - 54868998
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  54868933 cagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 49607476 - 49607412
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  49607476 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 53982073 - 53982011
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  53982073 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36707462 - 36707526
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||    
T  36707462 cagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33644262 - 33644200
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  33644262 cagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 52629362 - 52629305
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcat 58  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  52629362 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27714929 - 27714993
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  ||||||| |||||||| ||| |||||||||||||||||||    
T  27714929 cagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17470467 - 17470404
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||||||| |||  |||||||||||||||| ||| ||||||||||||||||||    
T  17470467 cagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 33118892 - 33118954
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||||||||||| |||||||    
T  33118892 atttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactctta 33118954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 48587129 - 48587187
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatt 59  Q
    ||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  48587129 cagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 8076454 - 8076393
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||  ||||| |||||||||||||| | |||||||||||||||    
T  8076454 agatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31456751 - 31456690
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattact 62  Q
    |||||||||||||||||||||||  |||||||||| |||| |||| ||||||||||||||||    
T  31456751 cagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 35536685 - 35536625
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||| |||||||||||||| |||||||||||| ||||| | ||||||||||||||||||    
T  35536685 atttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24699992 - 24700055
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||| |||||||||||||  ||||||||||| |||||| | ||||||||||||||||||    
T  24699992 cagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14623877 - 14623939
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| ||||||||||||   |||||||||||||||||| | |||||||||||||||||    
T  14623877 cagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26141570 - 26141632
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||| |||  |||||||||||||||||| | |||||||||||| ||||    
T  26141570 cagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20764953 - 20765015
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||| ||| |||||||| |||||||||| | ||||||| |||| ||||    
T  20764953 cagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 31697788 - 31697746
Alignment:
Q  145 ttaccctcgctcatagcgttttgttttcagagttgattttctt 187  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  31697788 ttacactcgctcatagcgttttgttctcagagttgattttctt 31697746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 41189805 - 41189867
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    |||||| ||||||||||||||  ||||||||||||||||| | | |||||||||| |||||||    
T  41189805 atttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactctta 41189867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26754757 - 26754700
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcat 58  Q
    ||||||||||||||| |||| ||  |||||||||||||||||||| |||||| |||||    
T  26754757 cagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 8956821 - 8956761
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||| |||||||||||||   ||||||||||| ||||| | ||||||||||||||||||    
T  8956821 atttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11347960 - 11348024
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||| |||||||   ||||||| ||||||||| | |||||||||||| ||||||    
T  11347960 cagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 30801774 - 30801829
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatt 59  Q
    |||||||||||||| |||||  |||||||  ||||||||||| |||||||||||||    
T  30801774 atttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcatt 30801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45058591 - 45058652
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| ||||||||||||   |||||||||||||||||||| | |||||||||| ||||    
T  45058591 cagatttttatgtgggtgtcaagg-gtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11907433 - 11907368
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    |||||||||||||| ||||  |   |||||||| ||||||||||| |||||||||||| |||||||    
T  11907433 cagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataactctta 11907368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13898093 - 13898154
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattact 62  Q
    ||||||||| ||||||||||||   |||||||||||||||||| | | ||| ||||||||||    
T  13898093 cagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2581977 - 2581913
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  2581977 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9474914 - 9474976
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  9474914 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48716320 - 48716382
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  48716320 cagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8346426 - 8346490
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  8346426 cagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactctt 8346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3000381 - 3000319
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||    
T  3000381 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27564773 - 27564835
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||| | |||||||||||||||||    
T  27564773 cagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37649260 - 37649198
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||    
T  37649260 cagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 47452359 - 47452420
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||    
T  47452359 agatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38595216 - 38595152
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  |||||||||||||||| ||| | |||||||||||||||||    
T  38595216 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38632359 - 38632423
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||| |||||||||||||||||||    
T  38632359 cagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50630520 - 50630457
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||  ||||   ||||||||||||||||||||||||||||||||||||||    
T  50630520 cagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51898721 - 51898784
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||  |||||||||||||||| | | ||||||||||||||||||    
T  51898721 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45044598 - 45044663
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||| |||||||||||| ||||||||||||||||||  || |||||||||| |||||||    
T  45044598 cagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactctta 45044663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23597129 - 23597193
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||| ||||||| ||||| ||||||||||||||||| | | |||||||||||||||||||    
T  23597129 cagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32813309 - 32813245
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||| |||  |||||||||||||||||| | |||||||||||| ||||||    
T  32813309 cagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 32813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44548414 - 44548473
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcatta 60  Q
    ||||||||||||||||| |||||| |||||||||||||||| | | ||||||||||||||    
T  44548414 cagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26274494 - 26274428
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    ||||||||| ||||| ||||||||  ||||||||||| ||||||| |||||||||||||| ||||||    
T  26274494 cagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcattattcttat 26274428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 49811565 - 49811631
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    ||||||||||||||| |||||||| |||||||| ||||||||| | ||||| |||||| ||||||||    
T  49811565 cagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactcttat 49811631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 50591038 - 50591100
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| ||||    
T  50591038 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5959038 - 5959102
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||   |||||||||||| ||||||| | |||||||||| ||||||    
T  5959038 cagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactctt 5959102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41758867 - 41758804
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||| |||||||  |||||||||||  ||| ||| ||||||||||||||||||    
T  41758867 cagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactct 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37926476 - 37926539
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||| ||||||||| |||   ||||||||||||||| | |||||||||||||| |||||    
T  37926476 cagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43194 - 43132
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||   ||||||| | ||||||  | |||||||||||||||||    
T  43194 cagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41608531 - 41608593
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||| |||||||   |||||||||||||||||| | | |||||||||| ||||    
T  41608531 cagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47748504 - 47748443
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| | ||||||||||   |||||||||||||||||||||| |||||||||| ||||    
T  47748504 cagatttttatatgggtgtcaagg-gtgtattgccacctaagggtatttatgtatcataactc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11152416 - 11152476
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattact 62  Q
    ||||||||||||||| |||| ||  |||||||||||||||| ||| ||||||| ||||||||    
T  11152416 cagatttttgtgtggatgtcgaagggtgtattgccacctaa-ggtgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 29239947 - 29239884
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  29239947 agatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3481716 - 3481654
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  3481716 cagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6034106 - 6034044
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  6034106 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48183087 - 48183153
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    |||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||    
T  48183087 cagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactcttat 48183153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 54473572 - 54473633
Alignment:
Q  2 agatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  54473572 agatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 480485 - 480549
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||    
T  480485 cagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50052466 - 50052530
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  |||||||||||||||||| | |||||||||||||||||||    
T  50052466 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11511500 - 11511562
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  11511500 cagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41236409 - 41236347
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||||    
T  41236409 cagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23608297 - 23608232
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    |||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||    
T  23608297 cagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactctta 23608232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 55475253 - 55475186
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttatg 68  Q
    |||||||||||||||||||||||  |||||||||||||||||| | | |||||||||| |||||||||    
T  55475253 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactcttatg 55475186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31910254 - 31910192
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||| ||||    
T  31910254 cagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 50526209 - 50526271
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||| | | |||||||||||||||||    
T  50526209 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42044405 - 42044469
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||  ||   ||||||||||||||||||| |||||||||||||||||||    
T  42044405 cagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40574841 - 40574779
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  ||||||| |||||||||| | |||||||||||| ||||    
T  40574841 cagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19670754 - 19670818
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||| |||||||   |||||||||||||||||||| | |||||||||| ||||||    
T  19670754 cagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29234283 - 29234346
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||  ||| |||||  ||||||||||| |||||||| ||||||||||||||||||    
T  29234283 cagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcattactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29977947 - 29977881
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    ||||||||||||||||||| ||   ||||||||||||||| || | | |||||||||||||||||||    
T  29977947 cagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcattactcttat 29977881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 55079752 - 55079814
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||| ||||||||||   |||||||||||||||||||| | |||||||||| ||||    
T  55079752 cagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 24995148 - 24995209
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||| |||||||||||||  ||||||||||| |||||||| || || |||||||||||||    
T  24995148 atttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29547997 - 29548062
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||||||||||||||    ||||||||||||||||| | | |||||||||| |||||||    
T  29547997 cagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctta 29548062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17983781 - 17983825
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggt 45  Q
    ||||||||||||||||||||||   ||||||||||||||||||||    
T  17983781 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 17983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32767020 - 32766956
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||| ||||||||||   ||||||||||||||||| || | |||||||||| ||||||    
T  32767020 cagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 47104603 - 47104540
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactcttat 67  Q
    |||||||||||||||||| | ||||||||| || |||||  | ||||| |||||||||||||||    
T  47104603 atttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactcttat 47104540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47986270 - 47986207
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||| ||||||    ||||||||||||||||||| | |||||||||| |||||    
T  47986270 cagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50813930 - 50813993
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||||||||||   ||||||| ||||||||| || | |||||||||| |||||    
T  50813930 cagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18924533 - 18924595
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| | ||||   |||||||||||||||||||||| |||| ||||| ||||    
T  18924533 cagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactc 18924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 53352604 - 53352660
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcat 58  Q
    ||||||||||||| ||||| ||| | |||||||| |||||||||| ||||||||||||    
T  53352604 cagatttttgtgtaggtgttaaagaatgtattgc-acctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35785261 - 35785199
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  35785261 cagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13811714 - 13811650
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| ||||||||    
T  13811714 cagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18520922 - 18520986
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||    
T  18520922 cagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36732980 - 36733044
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||||||  ||||||||| |||||||||| |||||||||||||||||||    
T  36732980 cagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2740336 - 2740273
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||  |||||||||||||||||| | ||||||||||||||||||    
T  2740336 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35943930 - 35943992
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||    
T  35943930 cagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 36875644 - 36875702
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattact 62  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 33149679 - 33149738
Alignment:
Q  4 atttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||    
T  33149679 atttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14831876 - 14831814
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| |||||||||||||  ||||||||||||||||| || |||||||||||||||||    
T  14831876 cagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28177837 - 28177775
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||||| | |||||||||||| ||||    
T  28177837 cagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40145469 - 40145407
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||| |||||||||||||||||    
T  40145469 cagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42414340 - 42414402
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    |||||||||||||||||||||||  |||||||||||||||  ||| |||||||||||||||||    
T  42414340 cagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15409648 - 15409713
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||||||||||||||| | ||||||| ||||||||| | |||||||||||| |||||||    
T  15409648 cagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactctta 15409713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3921303 - 3921367
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||||||||||||||||   |||||||||||||||||||| | |||||||||| ||||||    
T  3921303 cagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 3921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6679760 - 6679697
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    |||||||||||||||||||||||  |||||||||||||||| | | |||||||||||| |||||    
T  6679760 cagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2252206 - 2252269
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactct 64  Q
    ||||||||||||||||||||||   |||||||||||||||||| | | |||||||||| |||||    
T  2252206 cagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33825362 - 33825424
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| ||||||||||||  ||||||||||||||||||  | |||||| ||||||||||    
T  33825362 cagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39688935 - 39689000
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||||||||||||||    ||||||||||| ||||||| | |||||||||| |||||||    
T  39688935 cagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactctta 39689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10356697 - 10356639
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatag-tgtattgccacctaagggtatctatgtatcat 58  Q
    ||||||||||||||||||||||   | ||||||||||||||||| | ||||||||||||    
T  10356697 cagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26720578 - 26720516
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| ||| ||||| |||  |||||||||||||||||| | |||||||||||| ||||    
T  26720578 cagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26990327 - 26990265
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||| ||| ||||| |||  |||||||||||||||||| | |||||||||||| ||||    
T  26990327 cagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9603875 - 9603810
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctta 66  Q
    ||||||||||||| ||||| ||  ||||||||  ||||||||| | | ||||||||||||||||||    
T  9603875 cagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactctta 9603810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16327963 - 16327902
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattact 62  Q
    ||||||||| ||||||||||||    ||||||||||||||||| ||| ||| ||||||||||    
T  16327963 cagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcattact 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31009050 - 31008986
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    |||||||||||||||||||  || | ||||||| ||||||||| | | |||||||||| ||||||    
T  31009050 cagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactctt 31008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4091 - 4029
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||||||||||| |||  ||||||||||| |||| ||| |||||||||||||||||    
T  4091 cagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10147 - 10211
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactctt 65  Q
    ||||||||| ||||| |||||||   ||||||||||||||| ||| |||||||||||| ||||||    
T  10147 cagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactctt 10211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 971 - 1029
Alignment:
Q  5 tttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||| ||| |||  |||||||||||||||| | | |||||||||||||||||    
T  971 tttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 971 - 1029
Alignment:
Q  5 tttttgtgtgggtgtcaaatagtgtattgccacctaagggtatctatgtatcattactc 63  Q
    ||||||||||| ||| |||  |||||||||||||||| | | |||||||||||||||||    
T  971 tttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 152560 - 152516
Alignment:
Q  1 cagatttttgtgtgggtgtcaaatagtgtattgccacctaagggt 45  Q
    ||||||||||||||||||||||   ||||||||||||| ||||||    
T  152560 cagatttttgtgtgggtgtcaaggggtgtattgccacccaagggt 152516  T

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