View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19043_high_3 (Length: 459)
Name: NF19043_high_3
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 38749611 - 38750042
Alignment:
| Q |
12 |
agagacatgaagtagactataattgaatataacaaagtttagaaataaaatataagtggtactcaaacagactcatcaacaagcaaacaaaggaaataga |
111 |
Q |
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| T |
38749611 |
agagacatgaagtagactataattgaatataacaaagtttagaaataaaatataagtggtagtcaaaaagactcatcaacaagcaaacaaaggaaataga |
38749710 |
T |
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| Q |
112 |
cacaacaaaaattcgattttacgacactttaaattattagttgcatctacttcaaaaattggtctatttagatgattaaaaatatatatttttaattgca |
211 |
Q |
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| T |
38749711 |
cacaacaaaaattcgattttacgacactttaaatttttagttgcatctacttcaaaaattggtctatttagaggattaaaaatatatatttttaattgca |
38749810 |
T |
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| Q |
212 |
tttatcatctcttgaactatcggcatctttgatgagaaatcgaccacacaaccgaatgccaaatcaaaagaaggttcttacacaatttttcacttttccc |
311 |
Q |
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| T |
38749811 |
tttatcatctcttgaactatcggcatctttgatgagaaatcgaccacacaacagaatgccaaatcaaaagaaggttcttacacaatttttcacttttccc |
38749910 |
T |
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| Q |
312 |
aaaaaacaaaatcctttcaataacacaaataagtcattaggcatcaccatgattattgtgagccattgaaagattttgttcaatacggccaatgtgaaca |
411 |
Q |
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| T |
38749911 |
aaaaaacaaaatcctttcaataacacaaataagtctttaggcatcaccatgattattgtgagccattgaaagattttgttcaatacggccaatgtgaaca |
38750010 |
T |
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| Q |
412 |
aatgatcctccacatctttcttccccaaacac |
443 |
Q |
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| T |
38750011 |
aatgatcctccacatctttcttccccaaacac |
38750042 |
T |
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