View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19043_high_9 (Length: 340)

Name: NF19043_high_9
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19043_high_9
NF19043_high_9
[»] chr5 (7 HSPs)
chr5 (173-326)||(17771814-17771967)
chr5 (13-175)||(17772114-17772276)
chr5 (55-296)||(25954927-25955163)
chr5 (71-222)||(15991032-15991182)
chr5 (118-168)||(22641963-22642013)
chr5 (150-189)||(19761214-19761253)
chr5 (101-152)||(36463266-36463317)
[»] chr7 (8 HSPs)
chr7 (19-232)||(31270586-31270799)
chr7 (78-296)||(11693467-11693685)
chr7 (69-241)||(13258626-13258794)
chr7 (69-241)||(13265966-13266134)
chr7 (118-190)||(7145375-7145447)
chr7 (95-174)||(4123391-4123470)
chr7 (69-296)||(24676997-24677220)
chr7 (96-189)||(4514583-4514676)
[»] chr1 (10 HSPs)
chr1 (95-296)||(10649901-10650102)
chr1 (104-218)||(20817761-20817876)
chr1 (157-218)||(40817633-40817694)
chr1 (153-190)||(26858728-26858765)
chr1 (150-241)||(17048598-17048690)
chr1 (95-189)||(11833014-11833108)
chr1 (59-212)||(34487721-34487875)
chr1 (168-205)||(26331477-26331514)
chr1 (154-190)||(1896163-1896199)
chr1 (264-296)||(26858622-26858654)
[»] chr8 (7 HSPs)
chr8 (25-222)||(3318535-3318733)
chr8 (73-183)||(25662695-25662805)
chr8 (69-165)||(25621364-25621460)
chr8 (44-190)||(12842621-12842767)
chr8 (203-254)||(19342667-19342716)
chr8 (203-254)||(19372359-19372408)
chr8 (101-197)||(27927104-27927200)
[»] chr4 (9 HSPs)
chr4 (118-207)||(24716385-24716475)
chr4 (94-278)||(17651744-17651928)
chr4 (118-278)||(1186129-1186288)
chr4 (81-241)||(35150887-35151047)
chr4 (167-278)||(9855970-9856081)
chr4 (150-190)||(14116372-14116412)
chr4 (158-241)||(17743216-17743299)
chr4 (133-192)||(9883826-9883885)
chr4 (155-196)||(6115762-6115803)
[»] chr6 (5 HSPs)
chr6 (95-296)||(33545803-33546003)
chr6 (102-296)||(12870485-12870678)
chr6 (95-197)||(8863030-8863134)
chr6 (95-241)||(8868626-8868772)
chr6 (150-190)||(14760521-14760561)
[»] chr3 (1 HSPs)
chr3 (95-248)||(55212556-55212706)
[»] chr2 (6 HSPs)
chr2 (66-239)||(30461952-30462125)
chr2 (150-241)||(18114334-18114428)
chr2 (150-189)||(35512623-35512662)
chr2 (153-189)||(22111276-22111313)
chr2 (154-194)||(16195687-16195727)
chr2 (150-209)||(29966874-29966934)
[»] scaffold0466 (1 HSPs)
scaffold0466 (69-161)||(5182-5274)
[»] scaffold0008 (1 HSPs)
scaffold0008 (146-193)||(3820-3867)
[»] scaffold0057 (1 HSPs)
scaffold0057 (95-140)||(67637-67682)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 173 - 326
Target Start/End: Complemental strand, 17771967 - 17771814
Alignment:
Q  173 ttctacaatcagagtttacaaataagtttgattgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaagaaacctccaacacttaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17771967 ttctacaatcagagtttacaaataagtttgattgtgtttagactttgacactcaaagagtggtaaactatcttaaaactcaagaaacccccaacacttaa 17771868  T
Q  273 gaaattttaagattaaaagtttgtnnnnnnnccttagagaccctgtaccaaatg 326  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||    
T  17771867 gaaattttaagattaaaagtttgtaaaaaaaccttagagaccctgtaccaaatg 17771814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 17772276 - 17772114
Alignment:
Q  13 gagaatgagaaaacaatacaagcaattcttctggttcgtcctacaatccgatgttggtccagtctccttgcacttttaaacaattttccactataatcat 112  Q
    ||||| ||||||| || |||||||||| | || |||| ||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  17772276 gagaaagagaaaataacacaagcaattatcctagttcatcctacaattcgatgttggtccaatctccttgcactttcaaaaaattttccactataatcat 17772177  T
Q  113 aaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttc 175  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17772176 aaaatattacaattacttagacacacaaatataagatttctttgcctcacacaagaggacttc 17772114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 296
Target Start/End: Complemental strand, 25955163 - 25954927
Alignment:
Q  55 acaatccgatgttggtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttcct 154  Q
    |||||| |||||| || || |||||||||| ||| ||| ||||||| |||||||||  | || |||||||||| |||||||||||| | ||||||||| |    
T  25955163 acaatctgatgttagttcaatctccttgcattttcaaagaattttc-actataatcgcacaagattacaattatttagacacacaagtctaagatttcat 25955065  T
Q  155 tgcctcacacaagaggacttctacaatcagagtttacaaataagtttgattgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaa 254  Q
    ||||| ||||||||||||||||||||||||||||||||   || ||||| |||||||| |||||  || |||||||||| ||||||| ||| ||  ||||    
T  25955064 tgccttacacaagaggacttctacaatcagagtttaca---aaatttgaatgtgtttaaacttttgtactcaaagagtgataaactaactttaatttcaa 25954968  T
Q  255 gaaacctccaacacttaagaaattttaagattaaaagtttgt 296  Q
    | ||| || ||||| ||||||||| ||||||  |||||||||    
T  25954967 gtaacttctaacac-taagaaattctaagatataaagtttgt 25954927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 15991182 - 15991032
Alignment:
Q  71 ccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaa-tataagatttccttgcctcacacaagag 169  Q
    |||||| ||||||||||||||  | |||  || |||||||||| || ||||||||||||||||||| |||| | ||||||||| ||||||||| |  |||    
T  15991182 ccagtccccttgcacttttaaggatttt--cattataatcatacaagattacaattacttagacacgcaaagtttaagatttcattgcctcac-cttgag 15991086  T
Q  170 gacttctacaatcagagtttacaaataagtttgatt-gtgtttagactttgata 222  Q
     |||||| |||| ||| ||||||||||| ||||||| ||||||| |||||||||    
T  15991085 aacttcttcaattagaatttacaaataaatttgattggtgtttacactttgata 15991032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 22641963 - 22642013
Alignment:
Q  118 attacaattacttagacacacaaatataagatttccttgcctcacacaaga 168  Q
    |||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  22641963 attacaattacttaaacacacaagtctaagatttccttgcctcacacaaga 22642013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 19761214 - 19761253
Alignment:
Q  150 ttccttgcctcacacaagaggacttctacaatcagagttt 189  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  19761214 ttccttgcctcacacaagaggacttctacagtcagagttt 19761253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 36463266 - 36463317
Alignment:
Q  101 cactataatcataaaatattacaattacttagacacacaaatataagatttc 152  Q
    ||||||||||| | || ||||||||||||| ||||||||||| |||||||||    
T  36463266 cactataatcacataagattacaattacttggacacacaaatctaagatttc 36463317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 31270586 - 31270799
Alignment:
Q  19 gagaaaacaatacaagcaattcttctggttcgtcctacaatccgatgttggtccagtctccttgcacttttaaacaattttccactataatcataaaata 118  Q
    |||| ||||| |||||||||| |  ||||||  ||||||||| || ||| ||| |||  |||||||||| |||   |||||| |||||||||| | || |    
T  31270586 gagagaacaacacaagcaattatcatggttcaccctacaatctgaggttagtctagttcccttgcacttctaagagattttctactataatcacacaaga 31270685  T
Q  119 ttacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaataagtttgattgtgtttagacttt 218  Q
    |||||||||||||||||||||  | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  31270686 ttacaattacttagacacacatgtctaatatttccttgcctcacacttgaggacttctacaatcagagtttacaaataaatttgattttgtttacacttt 31270785  T
Q  219 gatattcaaagagt 232  Q
    |||| ||| |||||    
T  31270786 gataatcagagagt 31270799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 78 - 296
Target Start/End: Complemental strand, 11693685 - 11693467
Alignment:
Q  78 ccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttcta 177  Q
    ||||||||||| ||   |||||| |||||||||| | || ||||||||||||||||||||||| | ||| ||||||||| |||||||   ||||||| ||    
T  11693685 ccttgcactttcaagggattttcgactataatcacacaagattacaattacttagacacacaagtctaatatttccttgtctcacacttaaggacttgta 11693586  T
Q  178 caatcagagtttacaaataagtttgattgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaagaaacctccaacacttaagaaat 277  Q
    ||||||||||||||||||||  ||||||||| ||| ||||||||| ||| |||| ||||| ||| |||||| ||||| | || ||  | |||||||||||    
T  11693585 caatcagagtttacaaataaagttgattgtgcttacactttgatagtcagagagaggtaatctaacttaaagctcaatagacttctgatacttaagaaat 11693486  T
Q  278 tttaagattaaaagtttgt 296  Q
      || ||||||||||||||    
T  11693485 actaggattaaaagtttgt 11693467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 13258626 - 13258794
Alignment:
Q  69 gtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaaga 168  Q
    ||||| ||||||||||||| |||   ||||||||||||||||  | || |||| ||||| |||||||||||| | ||||||||| |||||||||||  ||    
T  13258626 gtccactctccttgcacttctaagggattttccactataatcccataaaattataattatttagacacacaagtttaagatttcattgcctcacacttga 13258725  T
Q  169 ggacttctacaatcagagtttacaaataagtttgattgtgtttagactttgatattcaaagagtggtaaacta 241  Q
     || ||||||||    ||||||||||||| |||||||||||||| ||||||||| ||  ||||||||||||||    
T  13258726 agaattctacaa----agtttacaaataaatttgattgtgtttacactttgatactcggagagtggtaaacta 13258794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 13265966 - 13266134
Alignment:
Q  69 gtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaaga 168  Q
    ||||| ||||||||||||| |||   ||||||||||||||||  | || |||| ||||| |||||||||||| | ||||||||| |||||||||||  ||    
T  13265966 gtccactctccttgcacttctaagggattttccactataatcccataaaattataattatttagacacacaagtttaagatttcattgcctcacacttga 13266065  T
Q  169 ggacttctacaatcagagtttacaaataagtttgattgtgtttagactttgatattcaaagagtggtaaacta 241  Q
     || ||||||||    ||||||||||||| |||||||||||||| ||||||||| ||  ||||||||||||||    
T  13266066 agaattctacaa----agtttacaaataaatttgattgtgtttacactttgatactcggagagtggtaaacta 13266134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 7145447 - 7145375
Alignment:
Q  118 attacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagttta 190  Q
    ||||||||| |||| | |||||| || |||| ||||||||||| ||||||||||||| |||||| ||||||||    
T  7145447 attacaattgcttaaatacacaagtaaaagacttccttgcctcgcacaagaggacttttacaattagagttta 7145375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 4123470 - 4123391
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggactt 174  Q
    ||||| ||||||||||| | || ||||||||| || |||||||||| | | ||| ||||||||||||||||||| |||||    
T  4123470 atttttcactataatcacacaagattacaatttctcagacacacaagtttgagacttccttgcctcacacaagaagactt 4123391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 296
Target Start/End: Original strand, 24676997 - 24677220
Alignment:
Q  69 gtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaaga 168  Q
    ||||||||||||| ||||| |||   ||||| || |||||||| | || |||||||||||||  |||||||| | |||||||||||| ||| | ||  ||    
T  24676997 gtccagtctccttacacttctaagagatttttcagtataatcacacaagattacaattactttaacacacaagtctaagatttccttccctta-acttga 24677095  T
Q  169 ggacttctacaatcagagtttacaaataagtttgatt-gtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaagaaacctccaaca 267  Q
     ||| ||||| |||| | ||| ||||    ||||||| ||||||  ||||| |||||| || |||||||||||| |||||| ||||  | || ||| |||    
T  24677096 cgacgtctaccatcaaaattttcaaa----tttgattggtgtttgcacttttatattctaaaagtggtaaactaacttaaatctcagtagacttccgaca 24677191  T
Q  268 cttaagaaattttaagattaaaagtttgt 296  Q
    ||||||||||| ||| ||| ||| |||||    
T  24677192 cttaagaaattctaatattgaaattttgt 24677220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 4514676 - 4514583
Alignment:
Q  96 ttttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagttt 189  Q
    |||||||||||||||| | || ||| ||||| ||   |||||||| |  |||  ||||||||||||||||||||||||| |||||| |||||||    
T  4514676 ttttccactataatcacacaagattgcaatttctccaacacacaagtcaaagtcttccttgcctcacacaagaggacttatacaattagagttt 4514583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 95 - 296
Target Start/End: Complemental strand, 10650102 - 10649901
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaa 194  Q
    ||||||||| ||||||||| || |||||||||||||| |||||||| | ||| ||||||||  |||||||  ||||||||||||||||||||||||||||    
T  10650102 attttccacgataatcatacaagattacaattacttaaacacacaagtctaaaatttccttatctcacacttgaggacttctacaatcagagtttacaaa 10650003  T
Q  195 taagtttgattgtgtttagactttgatattcaaagagtggtaaactatcttaaaa-ctcaagaaacctccaacacttaagaaattttaagattaaaagtt 293  Q
    ||| ||| ||||| |||| || |||||  ||| |||||||||||||| | ||||| |||||   || ||| |||||||||||||| ||||||| ||||||    
T  10650002 taaatttaattgtatttacac-ttgatgctcatagagtggtaaactaacctaaaagctcaaatgacttccgacacttaagaaattctaagattgaaagtt 10649904  T
Q  294 tgt 296  Q
    |||    
T  10649903 tgt 10649901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 20817876 - 20817761
Alignment:
Q  104 tataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagttta-caaataagtttg 202  Q
    |||||||| | || |||||| |||||||||||||||||| ||||||||  ||| ||| || |||||||||||| |||| |||||||| ||||||||||||    
T  20817876 tataatcacacaagattacagttacttagacacacaaatctaagattttattgtctcgcataagaggacttctgcaataagagtttatcaaataagtttg 20817777  T
Q  203 attgtgtttagacttt 218  Q
    |||||||||| |||||    
T  20817776 attgtgtttacacttt 20817761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 40817694 - 40817633
Alignment:
Q  157 cctcacacaagaggacttctacaatcagagtttacaaataagtttgattgtgtttagacttt 218  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||| | |||||||| |||||    
T  40817694 cctcacacaagaggacttctacagtcagagtttaacaataagtttaaatgtgtttatacttt 40817633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 26858765 - 26858728
Alignment:
Q  153 cttgcctcacacaagaggacttctacaatcagagttta 190  Q
    |||| |||||||||||||||||||||||||||||||||    
T  26858765 cttgactcacacaagaggacttctacaatcagagttta 26858728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 17048690 - 17048598
Alignment:
Q  150 ttccttgcctcacacaagaggacttctacaatcagagttta-caaataagtttgattgtgtttagactttgatattcaaagagtggtaaacta 241  Q
    |||| ||||||||| |||||||||  |||| |||||||||| |||| |||||||| |||||||| |||||   | ||| ||||||||||||||    
T  17048690 ttccctgcctcacagaagaggactcatacagtcagagtttaacaaaaaagtttgaatgtgtttacactttagaactcatagagtggtaaacta 17048598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 11833014 - 11833108
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagttt 189  Q
    ||||| ||||||||| | | || ||||||||| || | |||||||| | | ||| |||||||||||||| |||| ||||| |||||||| |||||    
T  11833014 atttttcactataattacacaaaattacaattgctcaaacacacaagttttagacttccttgcctcacataagaagacttttacaatcaaagttt 11833108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 212
Target Start/End: Original strand, 34487721 - 34487875
Alignment:
Q  59 tccgatgttggtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcc 158  Q
    ||||| ||| |||||||||||||||||||   |   | ||| ||||||||||| | || ||||||||| ||   |||||||| |   ||| ||||||  |    
T  34487721 tccgaggttagtccagtctccttgcacttcccatggaattttcactataatcacacaagattacaatttctccaacacacaagttagagacttccttaac 34487820  T
Q  159 tcacacaagaggacttctacaatcagag-tttacaaataagtttgattgtgttta 212  Q
    |||||||||| ||||| ||||||||||| ||||||||||| ||||  ||||||||    
T  34487821 tcacacaagatgacttatacaatcagagttttacaaataaatttgtatgtgttta 34487875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 26331477 - 26331514
Alignment:
Q  168 aggacttctacaatcagagtttacaaataagtttgatt 205  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  26331477 aggacttctacaatcagagttcacaaataaatttgatt 26331514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 1896163 - 1896199
Alignment:
Q  154 ttgcctcacacaagaggacttctacaatcagagttta 190  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  1896163 ttgcctcacacaagaggacttttacaatcagatttta 1896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 26858654 - 26858622
Alignment:
Q  264 aacacttaagaaattttaagattaaaagtttgt 296  Q
    ||||||||||||||| |||||||||||||||||    
T  26858654 aacacttaagaaattctaagattaaaagtttgt 26858622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 3318535 - 3318733
Alignment:
Q  25 acaatacaagcaattcttctggttcgtcctacaatccgatgttggtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaa 124  Q
    |||| |||| ||||| | ||||||| ||| |||||| ||  || |||||||||| ||||||||  ||   ||||||||| ||||||| | || |||||||    
T  3318535 acaacacaaacaattatgctggttcatcccacaatctgagattagtccagtctctttgcacttccaagggattttccacaataatcacacaagattacaa 3318634  T
Q  125 ttacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaat-aagtttgattgtgtttagactttgata 222  Q
    |||||||||| ||||| | |||||||| |||||||||||   ||||||||||||||  ||||||||||||| |||||||| |||||||| |||||||||    
T  3318635 ttacttagacgcacaactctaagatttacttgcctcacatttgaggacttctacaacaagagtttacaaataaagtttgaatgtgtttacactttgata 3318733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 25662695 - 25662805
Alignment:
Q  73 agtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggac 172  Q
    |||| ||||| ||||||||   ||||| |||||||| ||||||  ||||||||||| |||||||||||   ||| |||||||||||||||||| | |||     
T  25662695 agtcaccttgaacttttaagggatttttcactataaccataaaggattacaattacgtagacacacaagcctaaaatttccttgcctcacacatgtggaa 25662794  T
Q  173 ttctacaatca 183  Q
    ||||| |||||    
T  25662795 ttctaaaatca 25662805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 25621364 - 25621460
Alignment:
Q  69 gtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacaca 165  Q
    |||||| | ||||| ||||||||   ||||||||||||||||| |||  |||| |||||| || ||||||||   ||| ||||||||||||||||||    
T  25621364 gtccagacaccttgtacttttaagggattttccactataatcacaaaggattataattacataaacacacaagcctaaaatttccttgcctcacaca 25621460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 12842621 - 12842767
Alignment:
Q  44 tggttcgtcctacaatccgatgttggtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaata 143  Q
    |||||||||| | |||  || ||| |||||||| |||| |||||  |||  |||||  |||||||||| | || |||||||||  | | |||||||| |     
T  12842621 tggttcgtcccaaaatttgaggttagtccagtccccttacacttccaaaatattttttactataatcacacaagattacaattgatcaaacacacaagtt 12842720  T
Q  144 taagatttccttgcctcacacaagaggacttctacaatcagagttta 190  Q
    | ||| ||| |||||||||||||||||| || |||||| ||||||||    
T  12842721 tgagacttctttgcctcacacaagaggaattatacaattagagttta 12842767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 19342716 - 19342667
Alignment:
Q  203 attgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaa 254  Q
    |||||||||| ||||||||| ||||||  |||||||||| ||||||||||||    
T  19342716 attgtgtttacactttgatactcaaag--tggtaaactaacttaaaactcaa 19342667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 19372408 - 19372359
Alignment:
Q  203 attgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaa 254  Q
    |||||||||| ||||||||| ||||||  |||||||||| ||||||||||||    
T  19372408 attgtgtttacactttgatactcaaag--tggtaaactaacttaaaactcaa 19372359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 27927200 - 27927104
Alignment:
Q  101 cactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaataa 197  Q
    |||||||||||   || |||||||||| ||||||| | ||   ||||||| |||||| ||||| | |||||||| | |||| |||||||||||||||    
T  27927200 cactataatcacggaagattacaattatttagacatataaggctaagattaccttgcttcacaaaggaggacttttccaattagagtttacaaataa 27927104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 24716475 - 24716385
Alignment:
Q  118 attacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaat-aagtttgattgt 207  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  24716475 attacaattacttagacacacaagtctaaaatttccttgcctcacataagaggacttctacaatcagagtttacaaataaagtttgattgt 24716385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 278
Target Start/End: Complemental strand, 17651928 - 17651744
Alignment:
Q  94 aattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaa 193  Q
    |||||| |||||||| || | || || ||||||||||||||| |||| | |||||||| ||||||||||||  |||||| || ||||| |||||||| ||    
T  17651928 aattttacactataagcacacaagatgacaattacttagacatacaagtctaagattttcttgcctcacacttgaggacatccacaataagagtttataa 17651829  T
Q  194 ataagtttgattgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaagaaacctccaacacttaagaaatt 278  Q
    |||| |||  |  |||||| ||||||||| ||| |||||||||||||| |||||| ||||| |||| ||  ||||||||||||||    
T  17651828 ataaatttagtcatgtttacactttgataatcagagagtggtaaactaacttaaagctcaataaacttctgacacttaagaaatt 17651744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 1186288 - 1186129
Alignment:
Q  118 attacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaataagtttgattgtgtttagactt 217  Q
    ||||||||||||||||||||||| | ||||||||||||   |||| |  ||||||||||||||| | | | ||||||||| |||||||||||||| ||||    
T  1186288 attacaattacttagacacacaagtctaagatttccttagatcac-cttgaggacttctacaataaaaatatacaaataaatttgattgtgtttaaactt 1186190  T
Q  218 tgatattcaaagagtggtaaactatcttaaaactcaagaaacctccaacacttaagaaatt 278  Q
    ||||| ||| | |||||||||| | |||||| ||||| | || ||  ||||||||||||||    
T  1186189 tgatactcataaagtggtaaacgaacttaaagctcaatacacttctgacacttaagaaatt 1186129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 35151047 - 35150887
Alignment:
Q  81 tgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaa 180  Q
    ||||||||||||  | ||| |||  |||||| | || |||||||||| |||||||  ||| | |||||||| ||||| ||||||||||||  ||||||||    
T  35151047 tgcacttttaaatgacttttcacgttaatcagacaagattacaattatttagacatccaagtctaagattttcttgcttcacacaagaggtattctacaa 35150948  T
Q  181 tcagagtttacaaat-aagtttgattgtgtttagactttgatattcaaagagtggtaaacta 241  Q
     |||||||||   || ||||||||||||||||| |||||  || |||||||||| |||||||    
T  35150947 ccagagtttatggataaagtttgattgtgtttacacttt-ctagtcaaagagtgataaacta 35150887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 9856081 - 9855970
Alignment:
Q  167 gaggacttctacaatcagagtttacaaataagtttgattgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaagaaacctc-caa 265  Q
    ||||| |||||||||||||||||||||||||  |   ||||||||| || |||||| |||||||||||||||||| ||||||  |||| | || || |||    
T  9856081 gaggatttctacaatcagagtttacaaataaagtgatttgtgtttacac-ttgatactcaaagagtggtaaactaacttaaagttcaatagacttctcaa 9855983  T
Q  266 cacttaagaaatt 278  Q
    |||||||||||||    
T  9855982 cacttaagaaatt 9855970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 14116372 - 14116412
Alignment:
Q  150 ttccttgcctcacacaagaggacttctacaatcagagttta 190  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  14116372 ttccttgcctcacacaagaggacttctacaattagagttta 14116412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 17743216 - 17743299
Alignment:
Q  158 ctcacacaagaggacttctacaatcagagttta-caaataagtttgattgtgtttagactttgatattcaaagagtggtaaacta 241  Q
    ||||||||||||||||| |||||||||||||||  |||| | ||||| ||||  || |||||| || ||||||||||||||||||    
T  17743216 ctcacacaagaggacttttacaatcagagtttattaaatgaatttgaatgtgcatacactttg-tactcaaagagtggtaaacta 17743299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 9883885 - 9883826
Alignment:
Q  133 acacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttaca 192  Q
    |||||||| | ||| | ||||||| |||||||||||||| || |||||||||||||||||    
T  9883885 acacacaagtttaaaacttccttgtctcacacaagaggaattatacaatcagagtttaca 9883826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 6115762 - 6115803
Alignment:
Q  155 tgcctcacacaagaggacttctacaatcagagtttacaaata 196  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  6115762 tgcctcacaaaagaggacttatacaatcagagtttaccaata 6115803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 296
Target Start/End: Original strand, 33545803 - 33546003
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaa 194  Q
    ||||| ||| ||||||| | || ||||| ||||||||||||||||| | |||||||||| || ||||| |  || ||||||||||||||||||||||| |    
T  33545803 atttttcacaataatcacacaagattaccattacttagacacacaagtctaagatttccatgtctcac-cttgatgacttctacaatcagagtttacaga 33545901  T
Q  195 taagtttgattg-tgtttagactttgatattcaaagagtggtaaactatcttaaaactcaagaaacctccaacacttaagaaattttaagattaaaagtt 293  Q
    ||| |||||||| |||||| ||||||||| | | |||||||||||||| |||||| ||||| | || || ||| | | | ||||||||||||| ||||||    
T  33545902 taaatttgattgatgtttacactttgatacttagagagtggtaaactaacttaaagctcaatagacttctaac-catgaaaaattttaagattgaaagtt 33546000  T
Q  294 tgt 296  Q
    |||    
T  33546001 tgt 33546003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 102 - 296
Target Start/End: Complemental strand, 12870678 - 12870485
Alignment:
Q  102 actataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaataagttt 201  Q
    |||||||||| | || |||||||||| ||| ||||| || | |||| |||| |||| ||||||  | ||||||||||||||||||||||||||||| |||    
T  12870678 actataatcacacaagattacaattatttaaacaca-aagtctaaggtttctttgcttcacacttgtggacttctacaatcagagtttacaaataaattt 12870580  T
Q  202 gattgtgtttagactttgatattcaaagagtggtaaactatcttaaaactcaagaaacctccaacacttaagaaattttaagattaaaagtttgt 296  Q
    ||||||||||  |||||  || | | ||||| ||||||||  ||||| |||||   || ||  |||||||||||||||||||||| |||||||||    
T  12870579 gattgtgtttgtacttttgtacttagagagtcgtaaactaatttaaatctcaaatgacttctgacacttaagaaattttaagattgaaagtttgt 12870485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 8863134 - 8863030
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagaca--cacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttaca 192  Q
    ||||| ||| ||||||| | |||||||||||||||| ||||  ||||| | ||||||||  |||||||||||||||||||||||||||||||||||| ||    
T  8863134 atttttcaccataatcacataatattacaattactttgacatacacaagtctaagatttttttgcctcacacaagaggacttctacaatcagagtttgca 8863035  T
Q  193 aataa 197  Q
    |||||    
T  8863034 aataa 8863030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 8868772 - 8868626
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagacacacaaatat--aagatttccttgcctcacacaagaggacttctacaatcagagtttaca 192  Q
    ||||| ||| ||||||| | ||||| |||||||||| |||||||| || |  ||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  8868772 atttttcaccataatcacacaatatgacaattacttcgacacacacatgtctaagatttccttgcctcacacaagaggacttccaaaattagagtttaca 8868673  T
Q  193 aat-aagtttgattgtgtttagactttgatattcaaagagtggtaaacta 241  Q
    ||| || ||||||  |||||| |||||| || ||| ||||||||||||||    
T  8868672 aataaattttgat--tgtttacactttg-tactcagagagtggtaaacta 8868626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 14760521 - 14760561
Alignment:
Q  150 ttccttgcctcacacaagaggacttctacaatcagagttta 190  Q
    |||| |||||||||||||||||||| |||||| ||||||||    
T  14760521 ttccgtgcctcacacaagaggacttatacaattagagttta 14760561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 55212556 - 55212706
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacacaagaggacttctacaatcagagtttacaaa 194  Q
    ||||||||||||||||| |  | |||||||||||||| |||||||| | |||||||| |||| ||||||||||  |||||| ||||||||||||||||||    
T  55212556 attttccactataatcacacgagattacaattactta-acacacaagtttaagattttcttgtctcacacaaggtgacttcaacaatcagagtttacaaa 55212654  T
Q  195 t-aagtttgattgtgtttagactttgatattcaaagagtggtaaactatcttaaa 248  Q
    | ||||| |||  |||||| |||||| || ||||| |||||||||||| ||||||    
T  55212655 taaagttcgat--tgtttaaactttg-tactcaaaaagtggtaaactaacttaaa 55212706  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 239
Target Start/End: Original strand, 30461952 - 30462125
Alignment:
Q  66 ttggtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctcacaca 165  Q
    |||||| ||||  |||||||||| ||   ||||| ||||||||| | | || ||||||||| || |  ||||||||  ||||| ||||||| ||||||||    
T  30461952 ttggtctagtcctcttgcactttcaatggatttttcactataattacacaagattacaattgctcaagcacacaaaattaagacttccttgtctcacaca 30462051  T
Q  166 agaggacttctacaatcagagttta-caaataagtttgattgtgtttagactttgatattcaaagagtggtaaac 239  Q
    ||||||||| || ||||| |||||| ||||||| ||||  |||||||| ||||| ||| ||| ||||||||||||    
T  30462052 agaggacttataaaatcatagtttatcaaataaatttgtgtgtgtttacacttt-ataatcagagagtggtaaac 30462125  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 18114334 - 18114428
Alignment:
Q  150 ttccttgcctcacacaagaggacttctacaatcagagttt--acaaataagtttgattgtgttta--gactttgatattcaaagagtggtaaacta 241  Q
    |||||||||||| ||||||| |||| ||||||| ||||||    |||||||||||||||||||||   |||||| || ||||||||||||||||||    
T  18114334 ttccttgcctcaaacaagagtacttatacaatccgagttttattaaataagtttgattgtgtttacgtactttg-tactcaaagagtggtaaacta 18114428  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 35512662 - 35512623
Alignment:
Q  150 ttccttgcctcacacaagaggacttctacaatcagagttt 189  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  35512662 ttccttgcctaacacaagaggacttctacaatcatagttt 35512623  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 22111313 - 22111276
Alignment:
Q  153 cttgcctcacacaagaggacttctac-aatcagagttt 189  Q
    |||||||||||||||||||||||||| |||||||||||    
T  22111313 cttgcctcacacaagaggacttctacaaatcagagttt 22111276  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 16195727 - 16195687
Alignment:
Q  154 ttgcctcacacaagaggacttctacaatcagagtttacaaa 194  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  16195727 ttgcctcacacaagaggacatatacaataagagtttacaaa 16195687  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 29966934 - 29966874
Alignment:
Q  150 ttccttgcctcacacaagaggacttctacaatcagag-tttacaaataagtttgattgtgt 209  Q
    ||||||||||||||||||||| ||  ||||||||||| ||| ||||  |||||||||||||    
T  29966934 ttccttgcctcacacaagagggctcatacaatcagagtttttcaaaagagtttgattgtgt 29966874  T

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Target: scaffold0466 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 5274 - 5182
Alignment:
Q  69 gtccagtctccttgcacttttaaacaattttccactataatcataaaatattacaattacttagacacacaaatataagatttccttgcctca 161  Q
    |||||||| |||| |||||||||   ||||| ||||||||||| |||  ||||||||||| |||||||||||   ||| ||||||||||||||    
T  5274 gtccagtcaccttacacttttaagggatttttcactataatcacaaaggattacaattacgtagacacacaagcctaaaatttccttgcctca 5182  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 3820 - 3867
Alignment:
Q  146 agatttccttgcctcacacaagaggacttctacaatcagagtttacaa 193  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||||    
T  3820 agatttccttgcctcacacaagagaccttatacaataagagtttacaa 3867  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 67637 - 67682
Alignment:
Q  95 attttccactataatcataaaatattacaattacttagacacacaa 140  Q
    ||||| |||||||| |||| || |||||||||||||||||||||||    
T  67637 atttttcactataaccatacaagattacaattacttagacacacaa 67682  T

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