View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19043_low_1 (Length: 495)
Name: NF19043_low_1
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 12 - 480
Target Start/End: Complemental strand, 13086868 - 13086400
Alignment:
| Q |
12 |
acagaatgattttagaatcaaagtattttggtcatggaattaggaatatggtggctgaagaaggagctgaaagaaagagtagaaatgtgaagattgatgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13086868 |
acagaatgattttagaatcaaagtattttggtcatggaattaggaatatggtggctgaagaaggagctgaaagaaagagtagaaatgtgaagattgatgt |
13086769 |
T |
|
| Q |
112 |
gtggagagcatttttcgcaagatttggaatggtggaaacagaattgagcatgatgtctttgtatcaagctgaattgatggctaaaagatttccttgtgga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13086768 |
gtggagagcatttttcgcaagatttggaatggtggaaacagaattgagcatgatgtctttgtatcaagctgaattgatggctaaaagatttccctgtgga |
13086669 |
T |
|
| Q |
212 |
atttcttgcacatttgatatgaatggtcattgtcttcttgttggatggaaaggaacacccattaattctgtttctgtttggaaattcatttgattattgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
13086668 |
atttcttgcacatttgatatgaatggtcattgtcttcttgttggatggaaaggaacaccaattaactctgtttctgtttggaaattcatttgattattgt |
13086569 |
T |
|
| Q |
312 |
taaatgcaagagaaattttgtttcttgttgtccaaatacatgtgtggttagttggtgtctgcatagggttcaaatcttttgaagacgggttgtaaaatga |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13086568 |
taaatgcaagagaaattttgtttcttgttgtccaaatacatgtgtggttagttggtgtctgcatagggttcaaatctttcgaagacgggttgtaaaatga |
13086469 |
T |
|
| Q |
412 |
ttattaatgtcactttaactgataataattttgtcctataagtagtttagttcttcttatttgagtttt |
480 |
Q |
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| T |
13086468 |
ttattaatgtcactttaactgataataattttgtcctataagtagtttagttcttcttatttgagtttt |
13086400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 24 - 353
Target Start/End: Complemental strand, 13082563 - 13082234
Alignment:
| Q |
24 |
tagaatcaaagtattttggtcatggaattaggaatatggtggctgaagaaggagctgaaagaaagagtagaaatgtgaagattgatgtgtggagagcatt |
123 |
Q |
| |
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|||| |||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
13082563 |
tagagtcaatgtattttagtcatggtattaggaatattgtggctgaagaaggagctgaaagaaagagtaggaatgtaaagattgatgtgtggagagcatt |
13082464 |
T |
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| Q |
124 |
tttcgcaagatttggaatggtggaaacagaattgagcatgatgtctttgtatcaagctgaattgatggctaaaagatttccttgtggaatttcttgcaca |
223 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||| | |||||||| |
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| T |
13082463 |
tttcacaagatttggaatggtggaaacagaattgagtatgaagtctttgtatcaagctgaattagtggctaaaagatttgcttgtggatatgcttgcaca |
13082364 |
T |
|
| Q |
224 |
tttgatatgaatggtcattgtcttcttgttggatggaaaggaacacccattaattctgtttctgtttggaaattcatttgattattgttaaatgcaagag |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
13082363 |
tttgatatgaatggtcattgtcttcttgttggatggaaaggaacaccaattaattctgtttctgtttggaaattcatctgattattgtaaaatgcaagat |
13082264 |
T |
|
| Q |
324 |
aaattttgtttcttgttgtccaaatacatg |
353 |
Q |
| |
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| T |
13082263 |
acattttgtatcttgttgtccaaatccatg |
13082234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 13092760 - 13092435
Alignment:
| Q |
12 |
acagaatgattttagaatcaaagtattttggtcatggaattaggaatatggtggctgaagaaggagctgaaagaaagagtagaaatgtgaagattgatgt |
111 |
Q |
| |
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||||||||||| |||||||| ||| || || |||| ||||||||||| ||||||||| ||| |||||||||||||| | |||| ||||||||||| |
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| T |
13092760 |
acagaatgattatagaatcactgtacttcagttatggtattaggaatattttggctgaag---gagttgaaagaaagagtacagatgtaaagattgatgt |
13092664 |
T |
|
| Q |
112 |
gtggagagcatttttcgcaagatttggaatggtggaaacagaattgagcatgatgtctttgtatcaagctgaattgatggctaaaagatttccttgtgga |
211 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13092663 |
gtggagagcatttttcgctagatttggaatggtggaaacaaaattgagtatgaagtctttgtatcaagctgaattggtggctaaaagatttccttgtgga |
13092564 |
T |
|
| Q |
212 |
atttcttgcacatttgatatgaatggtcattgtcttcttgttggatggaaaggaacacccattaattctgtttctgtttggaaattcatttgattattgt |
311 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |
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| T |
13092563 |
aattcttgcacatttgatatgaatggtcattgtcttcttgttggatggaaaggaacaccaattaactctgtttctgtttggaaattcatttgatcgttgg |
13092464 |
T |
|
| Q |
312 |
taaatgcaagagaaattttgtttcttgtt |
340 |
Q |
| |
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|||||||||||||||||||||||| |||| |
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| T |
13092463 |
taaatgcaagagaaattttgtttcatgtt |
13092435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 13127895 - 13128011
Alignment:
| Q |
71 |
gaaggagctgaaagaaagagtagaaatgtgaagattgatgtgtggagagcatttttcgcaagatttggaatggtggaaacagaattgagcatgatgtctt |
170 |
Q |
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||||||| |||| ||||||||| ||||||||| |||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13127895 |
gaaggagttgaatgaaagagtacaaatgtgaaaattgatgtgtggagagtatttctcacaagatttggaatggtggaaagagaattgagcatgatgtctt |
13127994 |
T |
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| Q |
171 |
tgtatcaagctgaattg |
187 |
Q |
| |
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||||| ||||||||||| |
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| T |
13127995 |
tgtatgaagctgaattg |
13128011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 13128020 - 13128113
Alignment:
| Q |
227 |
gatatgaatggtcattgtctt-cttgttggatggaaaggaacacccattaattctgtttctgtttggaaattcatttgattattgttaaatgca |
319 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
13128020 |
gatatgaatggtcattgtctttcttgttggatggaaaggaacaccagttaactttgtttctgtttggaaattcatttgattattgttaaatgca |
13128113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 43427849 - 43427890
Alignment:
| Q |
399 |
ggttgtaaaatgattattaatgtcactttaactgataataat |
440 |
Q |
| |
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|||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
43427849 |
ggttgtaaaatggttattagtgtcactttaactaataataat |
43427890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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