View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19043_low_11 (Length: 299)

Name: NF19043_low_11
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19043_low_11
NF19043_low_11
[»] chr8 (15 HSPs)
chr8 (18-166)||(10632478-10632626)
chr8 (168-292)||(9220023-9220147)
chr8 (164-292)||(12501706-12501834)
chr8 (165-292)||(6416574-6416701)
chr8 (165-292)||(18385637-18385764)
chr8 (165-292)||(39622136-39622263)
chr8 (165-292)||(29089148-29089275)
chr8 (170-292)||(16888816-16888937)
chr8 (165-292)||(22513813-22513940)
chr8 (164-292)||(16428146-16428274)
chr8 (165-292)||(13279779-13279906)
chr8 (165-251)||(31726196-31726283)
chr8 (164-292)||(36896590-36896718)
chr8 (165-292)||(40557396-40557523)
chr8 (165-292)||(33441348-33441475)
[»] chr1 (17 HSPs)
chr1 (163-292)||(24775443-24775572)
chr1 (163-292)||(45536864-45536993)
chr1 (164-292)||(2023038-2023166)
chr1 (165-292)||(21332881-21333008)
chr1 (165-292)||(43643205-43643332)
chr1 (165-292)||(28645813-28645940)
chr1 (165-292)||(42829890-42830017)
chr1 (164-292)||(38984580-38984708)
chr1 (165-292)||(32524008-32524135)
chr1 (163-292)||(20274400-20274529)
chr1 (164-284)||(49004873-49004993)
chr1 (165-292)||(18410217-18410344)
chr1 (165-292)||(2840351-2840470)
chr1 (165-292)||(13496522-13496649)
chr1 (164-292)||(24455340-24455468)
chr1 (164-292)||(32049743-32049871)
chr1 (165-292)||(42435651-42435778)
[»] chr5 (14 HSPs)
chr5 (164-292)||(40830468-40830596)
chr5 (164-292)||(39565242-39565370)
chr5 (165-292)||(1598687-1598814)
chr5 (165-292)||(5812563-5812690)
chr5 (164-292)||(16478168-16478296)
chr5 (163-282)||(22386955-22387074)
chr5 (165-292)||(22496987-22497114)
chr5 (165-292)||(22721333-22721460)
chr5 (165-292)||(36789716-36789843)
chr5 (164-292)||(28969577-28969705)
chr5 (165-293)||(25336051-25336179)
chr5 (165-292)||(16475572-16475699)
chr5 (164-292)||(1212707-1212835)
chr5 (165-292)||(23107560-23107687)
[»] chr3 (20 HSPs)
chr3 (164-292)||(28418387-28418515)
chr3 (165-292)||(37964781-37964908)
chr3 (170-292)||(33955844-33955966)
chr3 (165-292)||(4066736-4066863)
chr3 (165-292)||(22397814-22397941)
chr3 (165-292)||(33957219-33957346)
chr3 (164-292)||(3344966-3345094)
chr3 (165-282)||(23302204-23302321)
chr3 (170-282)||(23302855-23302967)
chr3 (168-292)||(47334435-47334559)
chr3 (164-292)||(44516880-44517008)
chr3 (163-292)||(1003047-1003176)
chr3 (164-292)||(35350839-35350967)
chr3 (164-292)||(54610146-54610274)
chr3 (165-292)||(26706150-26706277)
chr3 (165-292)||(38190493-38190620)
chr3 (165-292)||(43844791-43844918)
chr3 (195-292)||(45583330-45583427)
chr3 (165-293)||(10122714-10122842)
chr3 (168-292)||(30106651-30106775)
[»] chr7 (14 HSPs)
chr7 (165-292)||(21954200-21954327)
chr7 (163-292)||(6612645-6612774)
chr7 (165-292)||(46804756-46804883)
chr7 (164-292)||(42049297-42049425)
chr7 (168-292)||(34643842-34643966)
chr7 (165-282)||(47400797-47400914)
chr7 (164-284)||(19297179-19297300)
chr7 (165-292)||(18784643-18784770)
chr7 (165-292)||(35113343-35113470)
chr7 (165-292)||(35504827-35504954)
chr7 (165-292)||(44045583-44045710)
chr7 (165-290)||(37316117-37316242)
chr7 (165-292)||(42046585-42046712)
chr7 (203-292)||(9179122-9179211)
[»] chr6 (7 HSPs)
chr6 (165-292)||(22510273-22510400)
chr6 (165-292)||(18903157-18903284)
chr6 (165-292)||(19420128-19420255)
chr6 (164-284)||(19420586-19420706)
chr6 (164-292)||(4271647-4271775)
chr6 (164-292)||(14175404-14175532)
chr6 (164-292)||(14179940-14180068)
[»] chr2 (9 HSPs)
chr2 (165-292)||(6904285-6904412)
chr2 (164-292)||(40263415-40263543)
chr2 (163-292)||(4651473-4651602)
chr2 (163-292)||(4720892-4721021)
chr2 (165-292)||(3555008-3555135)
chr2 (165-273)||(42224050-42224156)
chr2 (165-292)||(12256687-12256814)
chr2 (165-292)||(42843049-42843176)
chr2 (218-292)||(39122531-39122605)
[»] scaffold0368 (1 HSPs)
scaffold0368 (165-292)||(9946-10073)
[»] chr4 (13 HSPs)
chr4 (164-292)||(5943855-5943983)
chr4 (165-292)||(48425926-48426053)
chr4 (180-284)||(34802059-34802163)
chr4 (165-292)||(25887402-25887529)
chr4 (174-293)||(48945124-48945243)
chr4 (164-292)||(27024547-27024675)
chr4 (165-292)||(36353235-36353359)
chr4 (165-292)||(27071017-27071144)
chr4 (165-292)||(27151103-27151230)
chr4 (164-292)||(7509448-7509576)
chr4 (165-292)||(4943174-4943301)
chr4 (165-292)||(9768624-9768751)
chr4 (164-225)||(6243528-6243589)
[»] scaffold0088 (4 HSPs)
scaffold0088 (165-284)||(10643-10762)
scaffold0088 (174-272)||(1316-1414)
scaffold0088 (174-272)||(8706-8804)
scaffold0088 (174-272)||(25201-25299)
[»] scaffold0009 (1 HSPs)
scaffold0009 (165-292)||(198933-199060)
[»] scaffold1289 (1 HSPs)
scaffold1289 (174-272)||(255-353)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 10632626 - 10632478
Alignment:
Q  18 gtatcgaattttcaagtcttttttccttgactcataattttcacgttttcaatattagagaaatatctcactttcgtcctgtctttaattattgtagcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  10632626 gtatcgaattttcaagtcttttttccttgactcataattttcaagtcttcaatactagagaaatatctcactttcgtcccgtctttaattattgtagcta 10632527  T
Q  118 attcaattttttctagaaaatttaatttaatactccttcttgtcattat 166  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||    
T  10632526 attcaattttttctagaaaatttaatttaataccccctcttgtcattat 10632478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 9220023 - 9220147
Alignment:
Q  168 tttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaa 267  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||    
T  9220023 tttatactaacaatttagagtttttagaaatagtctattccaaaattctctcctctaaagatgtccacatcatcataatcctacgtggcatttgttccaa 9220122  T
Q  268 aaatttctccaaattttcaatacaa 292  Q
    |||||||||| |||||| |||||||    
T  9220123 aaatttctcctaatttttaatacaa 9220147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 12501834 - 12501706
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  12501834 tatctttatgctaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaaaatgtccacatcatcataatcctacttggcatttgtt 12501735  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||||| |||||| |||||||    
T  12501734 ccaaaaatttctcctaatttttaatacaa 12501706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 6416574 - 6416701
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||     
T  6416574 atctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgttc 6416673  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||| | |||||| |||||||    
T  6416674 caaaaatttcttctaatttttaatacaa 6416701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 18385764 - 18385637
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||     
T  18385764 atctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgttc 18385665  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||| | |||||| |||||||    
T  18385664 caaaaatttcttctaatttttaatacaa 18385637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 39622263 - 39622136
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| | ||||||| |||||||||||||||     
T  39622263 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctcttctctaaagatgtccacatcaccataatcatacttggcatttgttc 39622164  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||| ||||||| |||||| |||||||    
T  39622163 caaaagtttctcctaatttttaatacaa 39622136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 29089275 - 29089148
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||   ||||||||||| |||||||| |||||||| ||||| ||| ||||||||||||| |||||||     
T  29089275 atctttatactaacaatttagagtttttagaaataatttattccaaaatcctctcctccaaagatgttcacatcatcctaatcctacttggaatttgttc 29089176  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||| | |||||||    
T  29089175 caaaaatttctcctaattgttaatacaa 29089148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 16888937 - 16888816
Alignment:
Q  170 tatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaa 269  Q
    ||||||||||||||||||||||| |||||||| |||| |||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  16888937 tatactaacaatttagagtttttagaaatagcttatttcaaaac-ctctcctctaaagatgtccacatcatcctaatcctacttggcatttgttccaaaa 16888839  T
Q  270 atttctccaaattttcaatacaa 292  Q
    | |||||| |||| | |||||||    
T  16888838 aattctcctaattgttaatacaa 16888816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 22513813 - 22513940
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| ||||||||| |||||| || |||||||||||| |||||    
T  22513813 atctttatactaacaatttagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccaccttatcaaaagcctacttggcatatgttt 22513912  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  22513913 ctaaaattcctcctaatttttaatacaa 22513940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 16428146 - 16428274
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  16428146 tatctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgtt 16428245  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  16428246 cccaaaattcctcctaatttttaatacaa 16428274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 13279906 - 13279779
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| | || | |||||| ||||||||| | |||| || |||||||||||| ||||     
T  13279906 atctttatactaacaatttagagtttttagaaatagcctatttcaaattcctttgctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 13279807  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  13279806 ctaaaattcctcctaatttttaatacaa 13279779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 31726196 - 31726283
Alignment:
Q  165 atctttatactaacaatttagagtttttt-gaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctac 251  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||||||    
T  31726196 atctttatactaacaatttagagttttttagaaatagcttattccaaaatcctctcgtctaaagatgtccacatcatcctaatcctac 31726283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 36896718 - 36896590
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| ||||||| |||||  ||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  36896718 tatctttatactaacaatttagagtttttagaaatagtctattttaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgtt 36896619  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  36896618 cccaaaattcctcctaatttttaatacaa 36896590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 40557396 - 40557523
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  40557396 atctttatactaacaatttagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 40557495  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  40557496 ctaaaattcctcctaatttttaatacaa 40557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 33441348 - 33441475
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||| | || |||||||| | ||||||| | |||| || ||||| |||||| ||||     
T  33441348 atctttatactaacaatttagagtttttagaaatagcttatttcaaattcctttcctctaagggtgtccacctcatcaaaagcctacatggcatatgttc 33441447  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  33441448 ccaaaattcctcctaatttttaatacaa 33441475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 24775443 - 24775572
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |    
T  24775443 ttatctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcattttt 24775542  T
Q  263 ttcaaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||||| |||||| |||||||    
T  24775543 ttcaaaaatttctcctaatttttaatacaa 24775572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 45536864 - 45536993
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  45536864 ttatctttatactaacaatttagagtttttagaaatagcctattccaaaattctttcctctaaagatgtccacatcatcataatcctacttggcatttgt 45536963  T
Q  263 ttcaaaaatttctccaaattttcaatacaa 292  Q
    | ||||||||||||| |||||| |||||||    
T  45536964 tccaaaaatttctcctaatttttaatacaa 45536993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 2023038 - 2023166
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2023038 tatctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgtt 2023137  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||||| |||||| |||||||    
T  2023138 ccaaaaatttctcctaatttttaatacaa 2023166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 21333008 - 21332881
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||     
T  21333008 atctttatactaacaatttagagtttttagaaatagcccattccaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgttc 21332909  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  21332908 caaaaatttctcctaatttttaatacaa 21332881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 43643332 - 43643205
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||     
T  43643332 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcccacttggcatttgttc 43643233  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  43643232 caaaaatttctcctaatttttaatacaa 43643205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 28645940 - 28645813
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||     
T  28645940 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcatacttggcatttgtta 28645841  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||| ||||||| |||||| |||||||    
T  28645840 caaaagtttctcctaatttttaatacaa 28645813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 42830017 - 42829890
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||     
T  42830017 atctttatactaacaatttagagtttttagaaatagcctattctaaaattctctcctctaaagatgtccacatcttcataatcctacttggcatttgttc 42829918  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||||| |||| |||||| |||||||    
T  42829917 caaaaattcctcctaatttttaatacaa 42829890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 38984708 - 38984580
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38984708 tatctttatactaacaatttagagtttttagaaacagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgtt 38984609  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     |||| |||||||| |||||| |||||||    
T  38984608 ccaaagatttctcctaatttttaatacaa 38984580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 32524135 - 32524008
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||     
T  32524135 atctttatactaacaatttagagtttttagaaatagcctattttaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgttc 32524036  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||| |||| | |||||| |||||||    
T  32524035 caaaaacttcttctaatttttaatacaa 32524008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 20274400 - 20274529
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| || | ||||||||||||||| || ||| ||||||||||||||||||||    
T  20274400 ttatctttatactaacaatttagagtttttagaaatagcttattccaaaatcctttactctaaagatgtccatatcatcctaatcctacttggcatttgt 20274499  T
Q  263 ttcaaaaatttctccaaattttcaatacaa 292  Q
    | ||||||||||||| |||| | |||||||    
T  20274500 tccaaaaatttctcctaattgttaatacaa 20274529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 49004873 - 49004993
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||| ||||||||| || |||||||| |||    
T  49004873 tatctttatactaacaatttagagtttttagaaatagcctattccaaaatcctttcctctaaagacgtccacatcatcataatcatatttggcattcgtt 49004972  T
Q  264 tcaaaaatttctccaaatttt 284  Q
     ||||||||||||| ||||||    
T  49004973 ccaaaaatttctcctaatttt 49004993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 18410217 - 18410344
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||| || |||||||||||||||||||| |||||||||||| ||||||||||||     
T  18410217 atctttatactaacaatttagagtttttagaaatagtctatttcaaaatcctttcctctaaagatgtccacatcatcataatcctaattggcatttgttc 18410316  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||| |||| | |||||| |||||||    
T  18410317 caaaaacttcttctaatttttaatacaa 18410344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 2840351 - 2840470
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||     
T  2840351 atctttatactaacaatttagagtttttagaaacagcctattccaaaatcctctcctc--------tccacattatcataatcctacttggcatttgttc 2840442  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||| |||||||| |||||| |||||||    
T  2840443 caaatatttctcctaatttttaatacaa 2840470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 13496522 - 13496649
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || |||||| |||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  13496522 atctttatactaacaatttagagttcttagaaataacctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 13496621  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  13496622 ccaaaattcctcctaatttttaatacaa 13496649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 24455468 - 24455340
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || ||||||  ||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  24455468 tatctttatactaacaatttagagttcttagaaataatctatttcaaattcctttcctctaaggatgtccacctcatcaaaaacctacttggcatatgtt 24455369  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  24455368 cccaaaattcctcctaatttttaatacaa 24455340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 32049743 - 32049871
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || |||||||||||||  ||| |  | |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  32049743 tatctttatactaacaatttagagttcttagaaatagcctattttaaattcatttcctctaaggatgtccacctcatcaaaagcctacttggcatatgtt 32049842  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  32049843 cccaaaattcctcctaatttttaatacaa 32049871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 42435651 - 42435778
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  42435651 atctttatactaacaatttagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 42435750  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | ||| || |||| |||||| |||||||    
T  42435751 ctaaatttcctcctaatttttaatacaa 42435778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 40830468 - 40830596
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40830468 tatctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgtt 40830567  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||||| |||||| |||||||    
T  40830568 ccaaaaatttctcctaatttttaatacaa 40830596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 39565370 - 39565242
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  39565370 tatctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcctacgtggcatttgtt 39565271  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||||| |||||| |||||||    
T  39565270 ccaaaaatttctcctaatttttaatacaa 39565242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 1598814 - 1598687
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||     
T  1598814 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaatgatgtccacatcatcataatcatacttggcatttgttc 1598715  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  1598714 caaaaatttctcctaatttttaatacaa 1598687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 5812690 - 5812563
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||     
T  5812690 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcatacttggcatttgttc 5812591  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||| ||||||| |||||| |||||||    
T  5812590 caaaagtttctcctaatttttaatacaa 5812563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 16478168 - 16478296
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  16478168 tatctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgtt 16478267  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||| | |||||| |||||||    
T  16478268 ccaaaaatttcttctaatttttaatacaa 16478296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 22387074 - 22386955
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  22387074 ttatctttatactaacaatttagagtttttagaaatagcttattccaaaatcctctcctctaaagacatccacattatcctaatcctacttggcatttgt 22386975  T
Q  263 ttcaaaaatttctccaaatt 282  Q
    ||||||||||||||| ||||    
T  22386974 ttcaaaaatttctcctaatt 22386955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 22497114 - 22496987
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||| ||||||||||||     
T  22497114 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctccaaaggtgtccacatcatcataatcctatttggcatttgttc 22497015  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  22497014 caaaaatttctcctaatttttaatacaa 22496987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 22721460 - 22721333
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  22721460 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 22721361  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  22721360 ccaaaattcctcctaatttttaatacaa 22721333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 36789843 - 36789716
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  36789843 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 36789744  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  36789743 ccaaaattcctcctaatttttaatacaa 36789716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 28969705 - 28969577
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| ||||||||||| | |||| | || | |||||||||||||||| | |||| || ||||||| |||| ||||    
T  28969705 tatctttatactaacaatttagagtttttagaaatagcctaattcaaattccttttctctaaagatgtccacctcatcaaaagcctacttagcatatgtt 28969606  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  28969605 cctaaaattcctcctaatttttaatacaa 28969577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 293
Target Start/End: Original strand, 25336051 - 25336179
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||| ||||| |||| | || |||||||| ||||||||| | |||| || ||||||| |||| ||||     
T  25336051 atctttatactaacaatttagagttcttagaaatagtctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttagcatatgttc 25336150  T
Q  265 caaaaatttctccaaattttcaatacaac 293  Q
    | |||||| |||| |||||| ||||||||    
T  25336151 ccaaaattcctcctaatttttaatacaac 25336179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 16475572 - 16475699
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  16475572 atctttatactaacaatttagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 16475671  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | ||| || |||| |||||| |||||||    
T  16475672 ctaaatttcctcctaatttttaatacaa 16475699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 1212835 - 1212707
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||| ||||||| || ||||||||||| | |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  1212835 tatctttatactaacaatctagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccacctcatcaaaaacctacttggcatatgtt 1212736  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | ||| || |||| |||||| |||||||    
T  1212735 cctaaatttcctcctaatttttaatacaa 1212707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 23107687 - 23107560
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| |||| |||| | |||| || |||||||||||| ||||     
T  23107687 atctttatactaacaatttagagttcttagaaatagcctagttcaaattcctttcctctaaggatgcccacctcatcaaaagcctacttggcatatgttc 23107588  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | ||| || |||| |||||| |||||||    
T  23107587 ctaaatttcctcctaatttttaatacaa 23107560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 28418515 - 28418387
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  28418515 tatctttatactaacaatttagagtttttagaaatagcatattccaaaattctctcctctaaagatgtccacatcatcataatcctacgtggcatttgtt 28418416  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||||| |||||| |||||||    
T  28418415 ccaaaaatttctcctaatttttaatacaa 28418387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 37964781 - 37964908
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||     
T  37964781 atctttatattaacaatttagagtttttagaaatagcctattccaaaattctctcctctaaagatgtccacatcatcataatcctacgtggcatttgttc 37964880  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  37964881 caaaaatttctcctaatttttaatacaa 37964908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 33955966 - 33955844
Alignment:
Q  170 tatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaa 269  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  33955966 tatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgttccaaaa 33955867  T
Q  270 atttctccaaattttcaatacaa 292  Q
    |||||||| |||||| |||||||    
T  33955866 atttctcctaatttttaatacaa 33955844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 4066863 - 4066736
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||     
T  4066863 atctttatattaacaatttagagtttttagaaatagtctattccaaaattctctcctctaaagatgtccacatcatcataatcctacgtggcatttgttc 4066764  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  4066763 caaaaatttctcctaatttttaatacaa 4066736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 22397814 - 22397941
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||     
T  22397814 atctttatactaacaatttagagtttttagaaatagcttatttcaaaatcctttcctctaaagatgtccacatcatcataatcctacttggcatttgttc 22397913  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  22397914 caaaaatttctcctaatttttaatacaa 22397941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 33957346 - 33957219
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||     
T  33957346 atctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgttcacatcatcataatcttacttggcatttgttc 33957247  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  33957246 caaaaatttctcctaatttttaatacaa 33957219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 3345094 - 3344966
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||||||||||    
T  3345094 tatctttatactaacaatttaaagtttttagaaatagcctattccaaaatcctcttctctaaagatgtccacaccatcataatcctacttggcatttgtt 3344995  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     |||||||||| || || ||| |||||||    
T  3344994 ccaaaaatttcccctaaattttaatacaa 3344966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 23302204 - 23302321
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||     
T  23302204 atctttatactaacaatttaaagtttttagaaatagcttattccaaaatcctctcctctaaagatgttcacatcatcctaatcctacttggcatttgttc 23302303  T
Q  265 caaaaatttctccaaatt 282  Q
    ||||||||||||| ||||    
T  23302304 caaaaatttctcctaatt 23302321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 23302855 - 23302967
Alignment:
Q  170 tatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaa 269  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  23302855 tatactaacaatttagagtttttagaaatagcttattctaaaatcctctcctctaaagatgtccacatcatcctaatcctacttggcatttgttccaaaa 23302954  T
Q  270 atttctccaaatt 282  Q
    |||||||| ||||    
T  23302955 atttctcctaatt 23302967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 47334559 - 47334435
Alignment:
Q  168 tttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaa 267  Q
    ||||| |||| ||||||||||| || |||||||  ||||| ||||||||||  ||||||||| ||||||| |||||||||||||||| |||||||| |||    
T  47334559 tttattctaataatttagagttattggaaatagtttattctaaaattctcttatctaaagatatccacatcatcataatcctacttgacatttgttccaa 47334460  T
Q  268 aaatttctccaaattttcaatacaa 292  Q
    |||||||||| |||||| |||||||    
T  47334459 aaatttctcccaatttttaatacaa 47334435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 44517008 - 44516880
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  44517008 tatctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgtt 44516909  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  44516908 cccaaaattcctcctaatttttaatacaa 44516880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 1003176 - 1003047
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    ||||||||||||||||||||||||||| || ||||||||||||| |||| | || | ||||||  |||||||| | |||| || |||||||||||| |||    
T  1003176 ttatctttatactaacaatttagagttcttagaaatagcctatttcaaattccttttctctaagaatgtccacctcatcaaaagcctacttggcatatgt 1003077  T
Q  263 ttcaaaaatttctccaaattttcaatacaa 292  Q
    | | ||||||||||| |||||| |||||||    
T  1003076 tcccaaaatttctcctaatttttaatacaa 1003047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 35350967 - 35350839
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||| | || | ||||||  |||||||| | |||| || |||||||||||| ||||    
T  35350967 tatctttatactaacaatttagagttcttagaaatagcctatttcaaattccttttctctaagtatgtccacctcatcaaaagcctacttggcatatgtt 35350868  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | ||||||||||| |||||| |||||||    
T  35350867 cccaaaatttctcctaatttttaatacaa 35350839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 54610146 - 54610274
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| ||  |||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  54610146 tatctttatactaacaatttagagttcttaaaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgtt 54610245  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  54610246 cctaaaattcctcctaatttttaatacaa 54610274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 26706277 - 26706150
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||| |||||  ||| |||| ||||||||  |||||||| | |||| || |||||||||||| ||||     
T  26706277 atctttatactaacaatttagagttcttagaaatagtctattttaaatttctttcctctaagaatgtccacctcatcaaaagcctacttggcatatgttc 26706178  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | ||||||||||| |||||| |||||||    
T  26706177 ccaaaatttctcctaatttttaatacaa 26706150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 38190620 - 38190493
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || |||||||||||||  ||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  38190620 atctttatactaacaatttagagttcttagaaatagcctattttaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 38190521  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  38190520 ccaaaattcctcctaatttttaatacaa 38190493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 43844791 - 43844918
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| ||  |||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  43844791 atctttatactaacaatttagagttcttacaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 43844890  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  43844891 ctaaaattcctcctaatttttaatacaa 43844918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 45583427 - 45583330
Alignment:
Q  195 aaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatttctccaaattttcaatacaa 292  Q
    ||||||||| ||| ||||| || || | ||||||||||||||| |||||||| |||||||||||||||| ||||||||||| | |||||| |||||||    
T  45583427 aaatagcctcttctaaaatcctttcttttaaagatgtccacatcatcataattctacttggcatttgttccaaaaatttcttctaatttttaatacaa 45583330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 10122842 - 10122714
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || |||||||||||||  ||| | || |||| ||||||||||||  | |||| || |||||||||||| ||||     
T  10122842 atctttatactaacaatttagagttcttagaaatagcctattttaaattcctttcctttaaagatgtccatctcatcaaaagcctacttggcatatgttc 10122743  T
Q  265 caaaaatttctccaaattttcaatacaac 293  Q
    |  ||||| |||| |||||| ||||||||    
T  10122742 ccgaaattcctcctaatttttaatacaac 10122714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 30106651 - 30106775
Alignment:
Q  168 tttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaa 267  Q
    |||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||| ||||| | |||| || ||||||||| || |||| | |    
T  30106651 tttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatatccacctcatcaaaagcctacttggtatatgttccca 30106750  T
Q  268 aaatttctccaaattttcaatacaa 292  Q
    ||||| |||| || ||| |||||||    
T  30106751 aaattcctcctaacttttaatacaa 30106775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 21954327 - 21954200
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||     
T  21954327 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgttc 21954228  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||| |||||| |||||| |||||||    
T  21954227 caaaaaattctcctaatttttaatacaa 21954200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 6612645 - 6612774
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  6612645 ttatctttatattaacactttagagtttttagaaatagcctattccaaaattctctcctctaaagatgtccacatcatcataatcctacgtggcatttgt 6612744  T
Q  263 ttcaaaaatttctccaaattttcaatacaa 292  Q
    | ||||||||||||| |||||| |||||||    
T  6612745 tccaaaaatttctcctaatttttaatacaa 6612774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 46804756 - 46804883
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||     
T  46804756 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcatacttggcatttgttc 46804855  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||| ||||||| |||||| |||||||    
T  46804856 caaaagtttctcctaatttttaatacaa 46804883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 42049297 - 42049425
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  42049297 tatctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgtt 42049396  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||| | |||||| |||||||    
T  42049397 ccaaaaatttcttctaatttttaatacaa 42049425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 34643966 - 34643842
Alignment:
Q  168 tttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaa 267  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||    
T  34643966 tttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgttccaa 34643867  T
Q  268 aaatttctccaaattttcaatacaa 292  Q
    |||||||| | |||||| |||||||    
T  34643866 aaatttcttctaatttttaatacaa 34643842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 47400914 - 47400797
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||| |||  ||| ||| |||||||||| |     
T  47400914 atctttatactaacaatttagagtttttagaaatagtttattccaaaatcctctcctctaaagatgtccacatcatccaaatgctatttggcatttgctc 47400815  T
Q  265 caaaaatttctccaaatt 282  Q
    ||||||||||||| ||||    
T  47400814 caaaaatttctcctaatt 47400797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 19297300 - 19297179
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattc-tctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    |||||||||||||||| ||||||||||||  ||||   | ||||||| |||| |||||||||||||||||||| | |||||||||||| |||||||||||    
T  19297300 tatctttatactaacattttagagtttttaaaaatgcaccattccaagattcctctcctctaaagatgtccacctcatcataatcctatttggcatttgt 19297201  T
Q  263 ttcaaaaatttctccaaatttt 284  Q
    | ||||||||||||| ||||||    
T  19297200 tccaaaaatttctcctaatttt 19297179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 18784770 - 18784643
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  18784770 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 18784671  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  18784670 ccaaaattcctcctaatttttaatacaa 18784643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 35113343 - 35113470
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  35113343 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 35113442  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  35113443 ctaaaattcctcctaatttttaatacaa 35113470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 35504827 - 35504954
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || | ||||||||||| |||| | || |||||||| ||||||||| | |||| ||||||||||||||| ||||     
T  35504827 atctttatactaacaatttagagttcttagcaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaatcctacttggcatatgttc 35504926  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  35504927 ccaaaattcctcctaatttttaatacaa 35504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 44045710 - 44045583
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  44045710 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 44045611  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  44045610 ccaaaattcctcctaatttttaatacaa 44045583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 290
Target Start/End: Complemental strand, 37316242 - 37316117
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  37316242 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 37316143  T
Q  265 caaaaatttctccaaattttcaatac 290  Q
    | |||||| |||| |||||| |||||    
T  37316142 ctaaaattcctcctaatttttaatac 37316117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 42046585 - 42046712
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  42046585 atctttatactaacaatttagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 42046684  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | ||| || |||| |||||| |||||||    
T  42046685 ctaaatttcctcctaatttttaatacaa 42046712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 292
Target Start/End: Complemental strand, 9179211 - 9179122
Alignment:
Q  203 tattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||  |||||||| |||||| ||||||||||||  |||||| |||||||    
T  9179211 tattccaaaatcctcttctctaaagatgtccacatcatcataattttacttggcttttgttccaaaaatttctcataatttttaatacaa 9179122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 22510273 - 22510400
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||     
T  22510273 atctttatactaacaatttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccgcatcatcataatcctacttggcatttgttc 22510372  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  22510373 caaaaatttctcctaatttttaatacaa 22510400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 18903284 - 18903157
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||     
T  18903284 atctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgttc 18903185  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||| |||| | |||||| |||||||    
T  18903184 caaaaacttcttctaatttttaatacaa 18903157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 19420255 - 19420128
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||     
T  19420255 atctttatactaacaatttaaagtttttagaaatagcttattccaaaatcctctcctctaaagatgtccacatcatcctaatcttacttggcatttgttc 19420156  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||| | |||||||    
T  19420155 caaaaatttctcctaattattaatacaa 19420128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 19420586 - 19420706
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||  || |||||||||||||||| ||||||||    
T  19420586 tatctttatactaataatttagagtttttagaaatagcttattccaaaatcctctcctctaaagatgtcctaatcatcataatcctacttgacatttgtt 19420685  T
Q  264 tcaaaaatttctccaaatttt 284  Q
     ||||||||||||| ||||||    
T  19420686 ccaaaaatttctcctaatttt 19420706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 4271775 - 4271647
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| ||||||||| | |||| || |||||||| ||| ||||    
T  4271775 tatctttatactaacaatttagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccacctcatcaaaaacctacttgacatatgtt 4271676  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     |||||||| |||| |||||| |||||||    
T  4271675 ccaaaaattcctcctaatttttaatacaa 4271647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 14175404 - 14175532
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  14175404 tatctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgtt 14175503  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||  |||||||    
T  14175504 cccaaaattcctcctaatttataatacaa 14175532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 14179940 - 14180068
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||    
T  14179940 tatctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgtt 14180039  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||  |||||||    
T  14180040 cccaaaattcctcctaatttataatacaa 14180068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 6904285 - 6904412
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  6904285 atctttatactaacaatttagagtttttagaaatagcctattctaaaattctctcctctaaagatgtccacatcttcataatcctacttggcatttgttt 6904384  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||||| |||| |||||| |||||||    
T  6904385 caaaaattcctcctaatttttaatacaa 6904412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 40263415 - 40263543
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40263415 tatctttataataacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgtt 40263514  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||||| |||||| |||||||    
T  40263515 ccaaaaatttctcctaatttttaatacaa 40263543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 4651602 - 4651473
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    |||||||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4651602 ttatctttatactaacaatttagagtttttagaaacagtctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgt 4651503  T
Q  263 ttcaaaaatttctccaaattttcaatacaa 292  Q
    | |||| |||||||| |||||| |||||||    
T  4651502 tccaaagatttctcctaatttttaatacaa 4651473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 4721021 - 4720892
Alignment:
Q  163 ttatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgt 262  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  4721021 ttatctttatactaagaatttagagtttttagaaatagcttattctaaaattctctcctctaaagatgtccacatcattataatcctacttgacatttgt 4720922  T
Q  263 ttcaaaaatttctccaaattttcaatacaa 292  Q
    |||||||||| |||| |||||| |||||||    
T  4720921 ttcaaaaattcctcctaatttttaatacaa 4720892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 3555135 - 3555008
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||     
T  3555135 atctttatactaacaatttagagtttttagaaatagcttatttcaaaatcctctcctctaaagatgtccacatcatcctaatcctacttggcatttgttc 3555036  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||| |||||| |||| | |||||||    
T  3555035 caaaaaattctcctaattgttaatacaa 3555008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 165 - 273
Target Start/End: Original strand, 42224050 - 42224156
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||||| | ||||  | ||||||||||||||| ||| |||||||||||||||||||||     
T  42224050 atctttatactaacaatttaaagtttttagaaatagcttattccaaattcctct--tttaaagatgtccacatcatcctaatcctacttggcatttgttc 42224147  T
Q  265 caaaaattt 273  Q
    |||||||||    
T  42224148 caaaaattt 42224156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 12256814 - 12256687
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  12256814 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 12256715  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  12256714 ccaaaattcctcctaatttttaatacaa 12256687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 42843176 - 42843049
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  42843176 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 42843077  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  42843076 ccaaaattcctcctaatttttaatacaa 42843049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 39122605 - 39122531
Alignment:
Q  218 tcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatttctccaaattttcaatacaa 292  Q
    ||||||||  |||||||| | |||| || |||||||||||| |||| | ||||||||||| |||||| |||||||    
T  39122605 tcctctaagaatgtccacctcatcaaaagcctacttggcatatgttcccaaaatttctcctaatttttaatacaa 39122531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 10073 - 9946
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||     
T  10073 atctttatactaacaatttagagtttttagaaatagcctattctaaaattctctcctctaaagatgtccacatcttcataatcctacttggcatttgttc 9974  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||||| |||| |||||| |||||||    
T  9973 caaaaattcctcctaatttttaatacaa 9946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 5943855 - 5943983
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  5943855 tatctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgtt 5943954  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     ||||||||||| | |||||| |||||||    
T  5943955 ccaaaaatttcttctaatttttaatacaa 5943983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 48425926 - 48426053
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| |||||||||||     
T  48425926 atctttatattaacaatttagagtttttagaaatagcctatttcaaaattctctcctctaaagatgtccacatcataataatcctacgtggcatttgttc 48426025  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  48426026 caaaaatttctcctaatttttaatacaa 48426053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 34802059 - 34802163
Alignment:
Q  180 atttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatttctccaa 279  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |    
T  34802059 atttagagtttttagaaatagcctattccaaaatcctctcctctaaagatgtccacatcatcataatcctacttggcatttgttccaaaaatttctccta 34802158  T
Q  280 atttt 284  Q
    |||||    
T  34802159 atttt 34802163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 25887402 - 25887529
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||     
T  25887402 atctttatactaacaatttagagtttttagaaatagtttattccaaaatcctctcctctaaagatgtccacatcatcctaatcctacttgacatttgttc 25887501  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||| | |||||||    
T  25887502 caaaaatttctcctaattgttaatacaa 25887529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 174 - 293
Target Start/End: Original strand, 48945124 - 48945243
Alignment:
Q  174 ctaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaattt 273  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||     
T  48945124 ctaacaatttagagtttttagaaatagtctattctaaaattctctcctttaaagatgtccacatcatcataatcctatttggcatttgttccaaaaattc 48945223  T
Q  274 ctccaaattttcaatacaac 293  Q
    |||| |||||| ||||||||    
T  48945224 ctcctaatttttaatacaac 48945243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 27024675 - 27024547
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||| ||||| |||| ||||||||| |||||  ||||||||    
T  27024675 tatcttcatactaacaatttagagtttttagaaatagcctattctaaaatcctctcctttaaatatgtctacatcatcataatcatacttatcatttgtt 27024576  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     |||||| |||||||||||||||||||||    
T  27024575 ccaaaaaattctccaaattttcaatacaa 27024547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 36353359 - 36353235
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||| |||||||||||    |||||||||||| || ||||||||||||     
T  36353359 atctttatactaacaatttagagtttttaaaaatagcctatttcaaaattctctcatctaaagatgt---tattatcataatcttatttggcatttgttc 36353263  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    ||||||||||||| |||||| |||||||    
T  36353262 caaaaatttctcctaatttttaatacaa 36353235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 27071017 - 27071144
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  27071017 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 27071116  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  27071117 ctaaaattcctcctaatttttaatacaa 27071144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 27151103 - 27151230
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  27151103 atctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 27151202  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  27151203 ctaaaattcctcctaatttttaatacaa 27151230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 7509448 - 7509576
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtt 263  Q
    |||||||||||||||||||||||||| || |||||| |||||| |||| | || |||| ||| ||||||||| | |||| || |||||||||||| ||||    
T  7509448 tatctttatactaacaatttagagttcttagaaataacctatttcaaattcctttcctttaaggatgtccacctcatcaaaagcctacttggcatatgtt 7509547  T
Q  264 tcaaaaatttctccaaattttcaatacaa 292  Q
     | |||||| |||| |||||| |||||||    
T  7509548 cccaaaattcctcctaatttttaatacaa 7509576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 4943174 - 4943301
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||||||| | |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  4943174 atctttatactaacaatttagagttcttagaaatagcctaattcaaattcctttcctctaaggatgtccacctcatcaaaagcctacttggcatatgttc 4943273  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | ||| || |||| |||||| |||||||    
T  4943274 ctaaatttcctcctaatttttaatacaa 4943301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 9768751 - 9768624
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    ||||||||||||||||||||||||| || ||||||  ||||| |||| | || |||||||| ||||||||| | |||| || |||||||||||| ||||     
T  9768751 atctttatactaacaatttagagttcttagaaataatctatttcaaattcctttcctctaaggatgtccacctcatcaaaaacctacttggcatatgttc 9768652  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    | |||||| |||| |||||| |||||||    
T  9768651 ccaaaattcctcctaatttttaatacaa 9768624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 6243589 - 6243528
Alignment:
Q  164 tatctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaa 225  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||| | || ||||||||    
T  6243589 tatctttatactaacaatttagagttcttagaaatagcctatttcaaattcctttcctctaa 6243528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 10643 - 10762
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||     
T  10643 atctttatactaacaatttagagtttttagaaatagcctatttcaaaatcctctcctttaaagatgtccacatcagcataatcctacttggcatttgttc 10742  T
Q  265 caaaaatttctccaaatttt 284  Q
    ||||||||| ||||||||||    
T  10743 caaaaatttatccaaatttt 10762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 1414 - 1316
Alignment:
Q  174 ctaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatt 272  Q
    ||||||||| ||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||    
T  1414 ctaacaattaagactttttagaaatagcctattctaaaatcctctcctctaaagatgtctacatcatcataatcctacttggcatttgttcaaaaaatt 1316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 8804 - 8706
Alignment:
Q  174 ctaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatt 272  Q
    ||||||||| ||| ||||| |||||||| ||||| ||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||  |||||||    
T  8804 ctaacaattaagactttttagaaatagcttattctaaaatcctctcctctaaagatgtctacatcatcataatcctacttgacatttgttcaaaaaatt 8706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 25299 - 25201
Alignment:
Q  174 ctaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatt 272  Q
    ||||||||| ||| ||||| |||||||| ||||| ||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||  |||||||    
T  25299 ctaacaattaagactttttagaaatagcttattctaaaatcctctcctctaaagatgtctacatcatcataatcctacttgacatttgttcaaaaaatt 25201  T

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Target: scaffold0009 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 199060 - 198933
Alignment:
Q  165 atctttatactaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgttt 264  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||     
T  199060 atctttatactaacaatttagagtttttagaaatagcctatttaaaaatcctctcctctaaagatgtccacatcatcataatcctaattggcatttgttc 198961  T
Q  265 caaaaatttctccaaattttcaatacaa 292  Q
    |||||| |||| | |||||| |||||||    
T  198960 caaaaaattcttctaatttttaatacaa 198933  T

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Target: scaffold1289 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 255 - 353
Alignment:
Q  174 ctaacaatttagagttttttgaaatagcctattccaaaattctctcctctaaagatgtccacattatcataatcctacttggcatttgtttcaaaaatt 272  Q
    ||||||||| ||| ||||| |||||||| ||||| ||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||  |||||||    
T  255 ctaacaattaagactttttagaaatagcttattctaaaatcctctcctctaaagatgtctacatcatcataatcctacttgacatttgttcaaaaaatt 353  T

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