View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19043_low_16 (Length: 255)
Name: NF19043_low_16
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6629620 - 6629855
Alignment:
| Q |
1 |
acaacaaaataagatattactgttaaatcaaatgcaagaataagaactactaaacccaacaactgagtcgaagtacatgcagtactaaacccacgaaaaa |
100 |
Q |
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| T |
6629620 |
acaacaaaataagatattattgttaaatcagatgtaagaataagaactactaaacccaacaacttagtcgaagtacatgtagtactaaacccacgaaaaa |
6629719 |
T |
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| Q |
101 |
ttagcaccaagaaaacctaaccaaagggaagtaggaaagtcaaaaaaccgctagacaacctaaaagaccacaaaagatgacatggnnnnnnnntaccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6629720 |
ttagcaccaagaaaacctaaccaaagggaagtaggaaagtcacaaaaccgctagacaacctaaaagaccacaaaagatgacatgg--aaaaaataccatt |
6629817 |
T |
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| Q |
201 |
cctaaaggaatccctaaaacctcgaactaacgaacaaa |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6629818 |
cctaaaggaatccctaaaacctcgaactaacgaacaaa |
6629855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 6803214 - 6803413
Alignment:
| Q |
42 |
aagaactactaaacccaacaactgagtcgaagtacatgcagtactaaacccacgaaaaattagcaccaagaaaacctaacc--aaagggaagtaggaaag |
139 |
Q |
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|||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6803214 |
aagaaccactaaacccaacaattgagtcgaagtgcatgtagtactaaacccacgaaaaattagcaccaagaaaacctaaccaaaaagggaagtaggaaag |
6803313 |
T |
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| Q |
140 |
tcaaaaaaccgctagacaacctaaaagaccacaaaagatgacatggnnnnnnnntaccattcctaaaggaatccctaaaacctcgaactaacgaacaaat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
6803314 |
tcaaaaaaccgctagacaacctaaaagaccacaaaagatgacatggaaaaaaaataccattcctaaaagaatcgctaaaacctcgaactaacgaacaaat |
6803413 |
T |
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