View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19043_low_17 (Length: 253)
Name: NF19043_low_17
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4161134 - 4160888
Alignment:
| Q |
1 |
attaggaaacaaagttgtatggttagggttttgaaaatggttcaaatgggctgggagtaaccataatggaatttctggtcttaaattgaagtcttgttcc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4161134 |
attaggaaacaaagttgtagggttagggttttgaaaatggttcaaatgggttgggagtaaccataatggaatttctggtcttaaattgaagtcttgttcc |
4161035 |
T |
|
| Q |
101 |
ttttttagtgatagtggttgaaaaccatggctttgatgaaattgcgagtgagaagagaatagagggttcactgctgaaattgatgcactctcttgtgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4161034 |
ttttttagtgatagtggttgaaaaccatggctttgatgaaattgggagtgagaagagaatagagggttcactgctgaaattgatgcactctcctgtgata |
4160935 |
T |
|
| Q |
201 |
gaacgtcacagaaggctctgtgagtgatgaaactgtcccttctgcaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4160934 |
aaacgtcacagaaggctctgtgagtgatgaaactgtcccttctgcaa |
4160888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 50786107 - 50786148
Alignment:
| Q |
206 |
tcacagaaggctctgtgagtgatgaaactgtcccttctgcaa |
247 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
50786107 |
tcacagaaggctctgtgagttatgaaactgtctctcctgcaa |
50786148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 42898952 - 42898918
Alignment:
| Q |
206 |
tcacagaaggctctgtgagtgatgaaactgtccct |
240 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
42898952 |
tcacagaaggctctgtgagttatgaaactgtccct |
42898918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University