View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19043_low_19 (Length: 250)
Name: NF19043_low_19
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_low_19 |
 | |
|
| [»] scaffold0015 (2 HSPs) |
| | |
|
| [»] scaffold0391 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0015 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 29730 - 29526
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29730 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
29631 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29630 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
29531 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
29530 |
gccat |
29526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 24414 - 24211
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24414 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
24315 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24314 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
24215 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
24214 |
gcca |
24211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 86359 - 86563
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
86359 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
86458 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86459 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
86558 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
86559 |
gccat |
86563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 29010985 - 29010782
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29010985 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
29010886 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29010885 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttgatttctga |
29010786 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
29010785 |
gcca |
29010782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 91676 - 91880
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
91676 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
91775 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
91776 |
aaataaggccactttcttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttatga |
91875 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
91876 |
gccat |
91880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 19802830 - 19803034
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19802830 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
19802929 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19802930 |
aaataaggccacttccttcatgtattacaacaatttgaaatatataaaacttgagtttctaatttgagagttagagagtggattctctcttggtttctga |
19803029 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
19803030 |
gccat |
19803034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 26491919 - 26491752
Alignment:
| Q |
24 |
tttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgt |
123 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| |||| ||| |||| || ||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
26491919 |
tttactagattgtgtttcaattgatgtattaatta------ctatatcaactacaatctggcctctaagattgctataaataaggtcacttccttcctgc |
26491826 |
T |
|
| Q |
124 |
attacca-caatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttct |
198 |
Q |
| |
|
|| | || ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
26491825 |
atcatcatcaatttgaaatatataaaatttgagtttctcatttgaaagtt--agagtggattctctcttgatttct |
26491752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2797208 - 2797004
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2797208 |
ccaataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
2797109 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797108 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
2797009 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
2797008 |
gccat |
2797004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2790778 - 2790575
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
2790778 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctttaagattgctat |
2790679 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2790678 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
2790579 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
2790578 |
gcca |
2790575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 42375216 - 42375416
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
42375216 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcaacactatttcagctaccatatgacctctaggattgctat |
42375315 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42375316 |
aaataaggccacttctttcatgtattaccacaatttaaaatatacaaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
42375415 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
42375416 |
g |
42375416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 21010577 - 21010395
Alignment:
| Q |
24 |
tttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgt |
123 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| | ||||||||| |||| || ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
21010577 |
tttactagattgtgtttccattgatgtgttaattattattactatttcaactacaatctggcctctaggattgctataaataagaccacttccttcatgt |
21010478 |
T |
|
| Q |
124 |
attaccacaatttgaaatatat-aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat |
205 |
Q |
| |
|
|| | || | ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21010477 |
atcaacatcaattgaaatatataaaaacttgagtttctcatttcagagttagagagtggatactctcttggtttctgagccat |
21010395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 14477028 - 14476906
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtgga |
182 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14477028 |
ggcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtgga |
14476929 |
T |
|
| Q |
183 |
ttctctcttggtttctgagccat |
205 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14476928 |
ttctctcttggtttctgagccat |
14476906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 23200323 - 23200445
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtgga |
182 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23200323 |
ggcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtgga |
23200422 |
T |
|
| Q |
183 |
ttctctcttggtttctgagccat |
205 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23200423 |
ttctctcttggtttctgagccat |
23200445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 14471664 - 14471543
Alignment:
| Q |
84 |
gcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggat |
183 |
Q |
| |
|
||||||||| || |||||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14471664 |
gcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggat |
14471565 |
T |
|
| Q |
184 |
tctctcttggtttctgagccat |
205 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14471564 |
tctctcttggtttctgagccat |
14471543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 23202692 - 23202813
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtgga |
182 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23202692 |
ggcctctaggattactataaataaggacatttccttcatgtatcatcacaatttgaaatatattaaacttgagtttctcatttgagagttagagagtgga |
23202791 |
T |
|
| Q |
183 |
ttctctcttggtttctgagcca |
204 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23202792 |
ttctctcttggtttctgagcca |
23202813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 39170115 - 39170236
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtgga |
182 |
Q |
| |
|
|||||||||| || ||| || ||||| || |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39170115 |
ggcctctaggattactaaaactaaggccatttccttcatgcatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtgga |
39170214 |
T |
|
| Q |
183 |
ttctctcttggtttctgagcca |
204 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39170215 |
ttctctcttggtttctgagcca |
39170236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 14632793 - 14632655
Alignment:
| Q |
64 |
actatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcat |
163 |
Q |
| |
|
||||||||| |||| || || |||||| | ||||||||||| |||||||||||||| ||||| | || | ||||||||| ||||| ||||||||||||| |
|
|
| T |
14632793 |
actatttcaactacaatctgacctctaagattgctataaatgaggtcacttccttcgtgtatcatcatgaattgaaatatttaaaatttgagtttctcat |
14632694 |
T |
|
| Q |
164 |
ttgagagttagagagtggattctctcttggtttctgagc |
202 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
14632693 |
ttgaaagttaaagagtggattctctcttcgtttatgagc |
14632655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 394943 - 394763
Alignment:
| Q |
24 |
tttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgt |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||| ||||| ||| || || |||||| | || |||||||| | ||| | ||||||| |
|
|
| T |
394943 |
tttactagattgtgtttccattgatgtattaattattgtaactgtttcaattacaatttgacctctaagattagtataaataggatcattcttttcatgt |
394844 |
T |
|
| Q |
124 |
attaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca |
204 |
Q |
| |
|
|| | || | ||||| ||||||||| ||||||||||||||||| | ||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
394843 |
atcatcatcaattgaattatataaaatttgagtttctcatttgaaaattacagagtgaattctctcttgatttctgagcca |
394763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 42377395 - 42377430
Alignment:
| Q |
169 |
agttagagagtggattctctcttggtttctgagcca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42377395 |
agttagagagtggattctctcttggtttctgagcca |
42377430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 49625747 - 49625805
Alignment:
| Q |
135 |
ttgaaatatataaaact-tgagtttctcatttgagagttagagagtggattctctcttg |
192 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
49625747 |
ttgaaatatataaaattgtgagtttctcattagagagttagagaatggactctctcttg |
49625805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 34427170 - 34427206
Alignment:
| Q |
152 |
tgagtttctcatttgagagttagagagtggattctct |
188 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
34427170 |
tgagattctcgtttgagagttagagagtggattctct |
34427206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12842823 - 12843026
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12842823 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
12842922 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842923 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
12843022 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
12843023 |
gcca |
12843026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 37022786 - 37022666
Alignment:
| Q |
84 |
gcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggat |
183 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37022786 |
gcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggat |
37022687 |
T |
|
| Q |
184 |
tctctcttggtttctgagcca |
204 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
37022686 |
tctctcttggtttcttagcca |
37022666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 24092235 - 24092098
Alignment:
| Q |
64 |
actatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcat |
163 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24092235 |
actatttcaactaccatatggcctctaggattactataaataaggccatttccttcatgtattctcacaatttgaaatatataaaacttgagtttctcat |
24092136 |
T |
|
| Q |
164 |
ttgagagttagagagtggattctctcttggtttctgag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24092135 |
ttgagagttagagagtggattctctcttagtttctgag |
24092098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 37023130 - 37023040
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctag |
91 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37023130 |
ccaacaagccaccatatttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcaactaccatatggcctctag |
37023040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 656862 - 656802
Alignment:
| Q |
146 |
aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656862 |
aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccatg |
656802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 16778005 - 16777801
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16778005 |
ccaacaagccaccatatttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
16777906 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16777905 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
16777806 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
16777805 |
gccat |
16777801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 16772669 - 16772466
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
16772669 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggatagctat |
16772570 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16772569 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctattggtttctga |
16772470 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
16772469 |
gcca |
16772466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 32708101 - 32708304
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32708101 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatatattaattatcagcactatttcagctaccatatggcctctaggattgctat |
32708200 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32708201 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttagtttctga |
32708300 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
32708301 |
gcca |
32708304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 32703725 - 32703928
Alignment:
| Q |
2 |
caacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctata |
101 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
32703725 |
caacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcattatttcagctaccatatgacctctaggattgctata |
32703824 |
T |
|
| Q |
102 |
aataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgag |
201 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32703825 |
aataaggccacttccttcatgtattaccacaatttgaaatgtataaaacttgagtttctcatttgagagttatagagtggattctctcttggtttctgag |
32703924 |
T |
|
| Q |
202 |
ccat |
205 |
Q |
| |
|
|||| |
|
|
| T |
32703925 |
ccat |
32703928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 26243683 - 26243753
Alignment:
| Q |
135 |
ttgaaatatataaaact-tgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca |
204 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||||||| | || |||||||| |||||||||||| |
|
|
| T |
26243683 |
ttgaaatatataaaattgtgagtttctcatttaagagttagaaaatgaggtctctcttagtttctgagcca |
26243753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6806787 - 6806583
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6806787 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattaacagcactatttcagctaccatatagcctctaggattgctat |
6806688 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6806687 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
6806588 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
6806587 |
gccat |
6806583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 13723255 - 13723051
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13723255 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
13723156 |
T |
|
| Q |
101 |
aaataagg-tcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctg |
199 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13723155 |
aaataaggctca-ttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgatagttagagagtggattctctcttggtttctg |
13723057 |
T |
|
| Q |
200 |
agccat |
205 |
Q |
| |
|
|||||| |
|
|
| T |
13723056 |
agccat |
13723051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13719358 - 13719155
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
13719358 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcaacactatttcagctaccatatggcctctatgattgctat |
13719259 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13719258 |
aaataaggccacttttttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
13719159 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
13719158 |
gcca |
13719155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 5383472 - 5383349
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaattt-gaaatatataaaacttgagtttctcatttgagagttagagagtgg |
181 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5383472 |
ggcctctaggattactataaataaggccatttccttcatgtatcatcacaattttgaaatatataaaacttgagtttctcatttgagagttagagagtgg |
5383373 |
T |
|
| Q |
182 |
attctctcttggtttctgagccat |
205 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5383372 |
attctctcttggtttctgagccat |
5383349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 5378136 - 5378014
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaattt-gaaatatataaaacttgagtttctcatttgagagttagagagtgg |
181 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5378136 |
ggcctctaggattactataaataaggccatttccttcatgtatcatcacaattttgaaatatataaaacttgagtttctcatttgagagttagagagtgg |
5378037 |
T |
|
| Q |
182 |
attctctcttggtttctgagcca |
204 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5378036 |
attctctcttggtttctgagcca |
5378014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 23619303 - 23619481
Alignment:
| Q |
24 |
tttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgt |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| || ||||||||| ||| || |||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
23619303 |
tttactagattgtgtttccattgatgtattagttaccattactatttcaactaaaatctggcatctaggattgctataaataagatcacttccttcatgt |
23619402 |
T |
|
| Q |
124 |
attaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagc |
202 |
Q |
| |
|
|| | || | | |||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
23619403 |
atcatcatcaatggaaacatataaaactcgagtttctcatttgagagtaatagagtggattctctcttggtttctgagc |
23619481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 4100027 - 4100152
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaa---cttgagtttctcatttgagagttagagagt |
179 |
Q |
| |
|
|||||||||| || |||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4100027 |
ggcctctaggattactataaataaggctatttccttcatgtattatcacaatttgaaatatataaaaaaacttgagtttctcatttgagagttagagagt |
4100126 |
T |
|
| Q |
180 |
ggattctctcttggtttctgagccat |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4100127 |
ggattctctcttggtttctgagccat |
4100152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 4099855 - 4099737
Alignment:
| Q |
87 |
tctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattct |
186 |
Q |
| |
|
|||||| || ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4099855 |
tctaggattactataaataaggtcattttcttcatgtatcctcacaatttgaaatatataaaacttgagtttctcttttgagagttagagagtggattct |
4099756 |
T |
|
| Q |
187 |
ctcttggtttctgagccat |
205 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
4099755 |
ctcttggtttatgagccat |
4099737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 2185321 - 2185500
Alignment:
| Q |
24 |
tttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgt |
123 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||| | | ||||||| |||| || ||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
2185321 |
tttaatagattgtatttccattg--gtattaattactattattatttcatctacaatctggcctctaggattgctataaacaaggccacttccttcatgt |
2185418 |
T |
|
| Q |
124 |
attaccacaatttgaaatatat-aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca |
204 |
Q |
| |
|
|| | || | ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2185419 |
atcatcatcaattgaaatatatgaaaacttgagtttctcatttgaaagttagagaatggattctctcttgatttctgagcca |
2185500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26137153 - 26137052
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
26137153 |
ccaacaagtcaccatatttgacatttactagattgtgtttccattgatgtattaattattagtactatttcagctaccatatggcctctaagattgctat |
26137054 |
T |
|
| Q |
101 |
aa |
102 |
Q |
| |
|
|| |
|
|
| T |
26137053 |
aa |
26137052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 14026905 - 14027108
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
14026905 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatacggcctctgggattgctat |
14027004 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14027005 |
aaataaggccacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
14027104 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
14027105 |
gcca |
14027108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 6746812 - 6746689
Alignment:
| Q |
83 |
ggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaa--cttgagtttctcatttgagagttagagagtg |
180 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
6746812 |
ggcctctaggattactataaataaggccatttccttcatgtataatcacaatttgaaatatataaaaaacttgcgtttctcatttgagagttagagagtg |
6746713 |
T |
|
| Q |
181 |
gattctctcttggtttctgagcca |
204 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6746712 |
gattctctcttggtttctgagcca |
6746689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 8724775 - 8724822
Alignment:
| Q |
157 |
ttctcatttgagagttagagagtggattctctcttggtttctgagcca |
204 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
8724775 |
ttctcatttgagagttagatagtggattctctcttggcttttgagcca |
8724822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 5504457 - 5504422
Alignment:
| Q |
152 |
tgagtttctcatttgagagttagagagtggattctc |
187 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5504457 |
tgagtttctcattcgagagttagagagtggattctc |
5504422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 20925594 - 20925392
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20925594 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
20925495 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20925494 |
aaataaggccactt-cttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
20925396 |
T |
|
| Q |
201 |
gcca |
204 |
Q |
| |
|
|||| |
|
|
| T |
20925395 |
gcca |
20925392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 37758953 - 37759082
Alignment:
| Q |
43 |
attgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaata |
142 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||| || ||||||||| | |||||||||||||| ||||||||||||| ||| | || | |||||||| |
|
|
| T |
37758953 |
attgatgtattaattattattactatttcaactacaatctggcctctaagattgctataaataagatcacttccttcatatatcatcatcaattgaaata |
37759052 |
T |
|
| Q |
143 |
ta-taaaacttgagtttctcatttgagagt |
171 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |
|
|
| T |
37759053 |
tattaaaacttgagtttctcatttaagagt |
37759082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 36313882 - 36313780
Alignment:
| Q |
97 |
ctataaataaggtcacttccttcatgtattaccacaatttgaaatatat---aaaacttgagtttctcatttgagagttagagagtggattctctcttgg |
193 |
Q |
| |
|
||||||||||||| | ||||||| ||||| ||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
36313882 |
ctataaataaggttatttccttcctgtatcctcacaatttgaaatatataaaaaaacttgagttactc--------gtttgagagtggattctctcttgg |
36313791 |
T |
|
| Q |
194 |
tttctgagcca |
204 |
Q |
| |
|
||||||||||| |
|
|
| T |
36313790 |
tttctgagcca |
36313780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 11716479 - 11716683
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11716479 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
11716578 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
200 |
Q |
| |
|
|||||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11716579 |
aaataatgccacttccttcatgtatcaccataatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctga |
11716678 |
T |
|
| Q |
201 |
gccat |
205 |
Q |
| |
|
||||| |
|
|
| T |
11716679 |
gccat |
11716683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13160430 - 13160636
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13160430 |
ccaacaagcctccatgtttgacatttactagattgtgtttccattgatgtattaattattagtactatttcagctaccatatggcctctaggattgctat |
13160529 |
T |
|
| Q |
101 |
aaataaggtcacttccttcatgtattacca-caatttgaaatatat-aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttct |
198 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
13160530 |
aaataaggctacttccttcatgtattatcaccaatttgaaatatataaaaacttgagtttctcatatgagagttagagagtggattctctcttcgtttct |
13160629 |
T |
|
| Q |
199 |
gagccat |
205 |
Q |
| |
|
||||||| |
|
|
| T |
13160630 |
gagccat |
13160636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 13166903 - 13167091
Alignment:
| Q |
18 |
ttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttcct |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13166903 |
ttgacatttactagattgtgtttccatttatgtattaattattaatactatttcagctaccttatggcctctaggattgctataaataaggtcacttcct |
13167002 |
T |
|
| Q |
118 |
tcatgtattacca-caatttgaaatatat-aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca |
204 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
13167003 |
tcatgtattatcaccaatttgaaatatataaaaacttgagtttctcatttgagagttagagagtgaattctctcttgatttctgagcca |
13167091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 11708963 - 11709076
Alignment:
| Q |
1 |
ccaacaagccaccatgtttgacatttattagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11708963 |
ccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctaggattgctat |
11709062 |
T |
|
| Q |
101 |
aaataaggtcactt |
114 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
11709063 |
aaataaggccactt |
11709076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 11711343 - 11711436
Alignment:
| Q |
110 |
cacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcc |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11711343 |
cacttccttcatgtatcaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcc |
11711436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 37063112 - 37063284
Alignment:
| Q |
31 |
gattgtgtttccattgatgtattaattatcagcactatttcagctaccatatggcctctagggttgctataaataaggtcacttccttcatgtattacca |
130 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||| |||| |||| ||||||| ||||||||||||| ||||||||||| |||||| | || |
|
|
| T |
37063112 |
gattgtgttttcattgatgtattaattattattactatttcaactacaatataacctctagaattgctataaataatgtcacttcctttatgtatcatca |
37063211 |
T |
|
| Q |
131 |
caatttgaaatatat-aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca |
204 |
Q |
| |
|
| ||||||||||| |||||||||||||| || | || | |||||||||||| |||||||| ||||||||||| |
|
|
| T |
37063212 |
ttaattgaaatatataaaaacttgagtttcacactcgaaaattagagagtgga--ctctcttgatttctgagcca |
37063284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 34379057 - 34379146
Alignment:
| Q |
81 |
atggcctctagggttgctataaataaggtcacttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagt |
171 |
Q |
| |
|
||||| |||||| || ||||||||||||||| ||||||||||||| | || | ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
34379057 |
atggcttctaggattactataaataaggtcatttccttcatgtatcaacatca-ttgaattatataaattatgagtttcttatttgagagt |
34379146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 254 - 224
Alignment:
| Q |
205 |
tgaagcaggactagtatctccgtatctatct |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
254 |
tgaagcaggactagtatctccgtatctatct |
224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University