View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19043_low_21 (Length: 244)
Name: NF19043_low_21
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_low_21 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 4142893 - 4142656
Alignment:
| Q |
7 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142893 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
4142794 |
T |
|
| Q |
107 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgtctaacatatatcctaaatgcagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
4142793 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataatatgggtttgtctaatatatatcctaaatgcagt |
4142694 |
T |
|
| Q |
207 |
ggttatatgccaccggaatatgcaatggaggggctttt |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4142693 |
ggttatatgccacctgaatatgcaatggaggggctttt |
4142656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 4150905 - 4150674
Alignment:
| Q |
7 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
106 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
4150905 |
aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcat |
4150806 |
T |
|
| Q |
107 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgt-ctaacatatatcctaaatgcag |
205 |
Q |
| |
|
|| |||| ||||||||||||| | |||||||| | | |||| ||| |||||| || | || |||| || | |||||||| | |||||||||| |
|
|
| T |
4150805 |
ttgatattataatgttggaattagtgttacaaatgagtggtttaatt-ttattt------tttttacttggggttatagtaacatatgttctaaatgcag |
4150713 |
T |
|
| Q |
206 |
tggttatatgccaccggaatatgcaatggaggggctttt |
244 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4150712 |
tggttatatgccgcctgaatatgcaatggaggggctttt |
4150674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 4120456 - 4120335
Alignment:
| Q |
8 |
atatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcatc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
4120456 |
atatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcatt |
4120357 |
T |
|
| Q |
108 |
ggacattacaatgttggaatta |
129 |
Q |
| |
|
| |||||| | |||||| |||| |
|
|
| T |
4120356 |
gaacattatattgttgggatta |
4120335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 4130541 - 4130454
Alignment:
| Q |
7 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagta |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130541 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagta |
4130454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 4159922 - 4159837
Alignment:
| Q |
7 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaag |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
4159922 |
aatatcagactttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag |
4159837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 4120277 - 4120230
Alignment:
| Q |
197 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggctttt |
244 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4120277 |
taaatgcagtggttatatgccgccagaatatgcaatggaggggctttt |
4120230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 4159723 - 4159675
Alignment:
| Q |
196 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggctttt |
244 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
4159723 |
ctaaatgcagtggttatatgccgcctgaatatgcaatggaaggactttt |
4159675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 4130359 - 4130311
Alignment:
| Q |
196 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggctttt |
244 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||| ||| ||||| |
|
|
| T |
4130359 |
ctaaatgtagtggttatatgccgcctgaatatgcaatggggggactttt |
4130311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University