View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19043_low_5 (Length: 416)
Name: NF19043_low_5
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 15466100 - 15465943
Alignment:
| Q |
29 |
ctcaaaccagaaaggaatgagctattcggatgctcctcctgagaaaaactctacttctcagggaactcggacactaaatgctacaggtcagtcttatagc |
128 |
Q |
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||||||||||||| | || |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||| ||||||||| |
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| T |
15466100 |
ctcaaaccagaaaagtattagctattcggatcctcctcctgagaaaaaccctacttctcagggaactcagacactaagtgctacaaatcactcttatagc |
15466001 |
T |
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| Q |
129 |
aacacttgatatggccaacagg----tatgtgatttttctctcctatatacattttga |
182 |
Q |
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| T |
15466000 |
aacacttgatatggccaacaggtacatatttgatttttctctcctatatatattttga |
15465943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 393
Target Start/End: Complemental strand, 15465706 - 15465601
Alignment:
| Q |
288 |
aaatctcattacccctgacaaattaattactgtaaagatgcctttaataatttttagaaataattttattaaatcaatttgaagtctcactaatatttaa |
387 |
Q |
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|||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||| |||||| |||| |||| |||| ||||||||| |
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| T |
15465706 |
aaatctcattacccctgacaaattaatttctgtaaagtttcctctaataatttttagaaataattttgttaaatgaattagaagcctcaataatatttag |
15465607 |
T |
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| Q |
388 |
aaataa |
393 |
Q |
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|||||| |
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| T |
15465606 |
aaataa |
15465601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 18472151 - 18472188
Alignment:
| Q |
116 |
tcagtcttatagcaacacttgatatggccaacaggtat |
153 |
Q |
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| T |
18472151 |
tcagtcttatagcaacacttgatatggccaagaggtat |
18472188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 18477777 - 18477814
Alignment:
| Q |
116 |
tcagtcttatagcaacacttgatatggccaacaggtat |
153 |
Q |
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| T |
18477777 |
tcagtcttatagcaacacttgatatggccaagaggtat |
18477814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 385 - 416
Target Start/End: Complemental strand, 27069345 - 27069314
Alignment:
| Q |
385 |
taaaaataaggcttaatgatgtgtttcgtcct |
416 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27069345 |
taaaaataaggcttaatgatgtgtttcgtcct |
27069314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 385 - 416
Target Start/End: Complemental strand, 27149430 - 27149399
Alignment:
| Q |
385 |
taaaaataaggcttaatgatgtgtttcgtcct |
416 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27149430 |
taaaaataaggcttaatgatgtgtttcgtcct |
27149399 |
T |
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