View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19043_low_6 (Length: 390)

Name: NF19043_low_6
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19043_low_6
NF19043_low_6
[»] chr1 (2 HSPs)
chr1 (1-373)||(27257031-27257406)
chr1 (275-327)||(4433202-4433254)
[»] chr5 (1 HSPs)
chr5 (243-373)||(28705234-28705364)
[»] chr4 (3 HSPs)
chr4 (206-373)||(26159433-26159604)
chr4 (69-144)||(9365511-9365582)
chr4 (161-211)||(26159185-26159235)
[»] chr7 (2 HSPs)
chr7 (243-373)||(26636172-26636302)
chr7 (161-211)||(26636606-26636656)
[»] chr3 (3 HSPs)
chr3 (265-373)||(41474720-41474827)
chr3 (161-211)||(41475048-41475098)
chr3 (69-102)||(52282110-52282143)
[»] chr2 (1 HSPs)
chr2 (265-373)||(22559928-22560035)
[»] chr8 (1 HSPs)
chr8 (69-144)||(37065101-37065172)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 27257031 - 27257406
Alignment:
Q  1 ctaatatgatgtttcttctcacttgtttcaatttcgacaccaaaaatcccttcggtagtnnnnnnnnn-ctcatctaaaataccctagtttcactagctt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  27257031 ctaatatgatgtttcttctcacttgtttcaatttcgacaccaaaaatcccttcggtagtaaaaaaaaaactcatctaaaataccctagtttcactagctt 27257130  T
Q  100 ccttcctcaaattgggatcagtctcatgaaaattgcaatccatatgggatggaatgggatggataactcttgattttttgtttgtacaccaggaattggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27257131 ccttcctcaaattgggatcagtctcatgaaaattgcaatccatatgggatgggatgggatggataactcttgattttttgtttgtacaccaggaattggc 27257230  T
Q  200 agcaattcaatttgaggaattaac--cgagagaatatggaaatgtaaacaagaataattcgtgatgcatcatgtatgcaatctgagttttttaatgattg 297  Q
    ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27257231 agcaattcaatttgaggaattaactaagagagaatatggagatgtaaacaagaataattcgtgatgcatcatgtatgcaatctgagttttttaatgattg 27257330  T
Q  298 aaaacaataatagtgtgagattgagagaaaagggtgcacacaccgagttaatttagaaactattgtgagcctttga 373  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  27257331 aaaacaataatagtgtgagattgggagaaaagggtgcacacactgagttaacttagaaactattgtaagcctttga 27257406  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 4433254 - 4433202
Alignment:
Q  275 caatctgagttttttaatgattgaaaacaataatagtgtgagattgagagaaa 327  Q
    |||| |||||||| |||| ||| ||||||||||||||||| |||||| |||||    
T  4433254 caatttgagttttgtaatcatttaaaacaataatagtgtgtgattgaaagaaa 4433202  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 28705364 - 28705234
Alignment:
Q  243 aaacaagaataattcgtgatgc-atcatgtatgcaatctgagttttttaatgattgaaaacaataatagtgtgagattgagagaaaagggtgcacacacc 341  Q
    |||||||||||| || |||||| ||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||      
T  28705364 aaacaagaataaatcatgatgcgatcatatatgcgatctgagtttttgaatgactgaaaacaataatagtgtgagattgagag-aaagggtgcacacaat 28705266  T
Q  342 gagttaatttagaaactattgtgagcctttga 373  Q
    ||||||| ||||||||||||||||||||||||    
T  28705265 gagttaaattagaaactattgtgagcctttga 28705234  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 373
Target Start/End: Original strand, 26159433 - 26159604
Alignment:
Q  206 tcaatttgaggaattaacc--gagagaata--tggaaatgtaaacaagaataattcgtgatgc-atcatgtatgcaatctgagttttttaatgattgaaa 300  Q
    ||||| |||||||||||||  |||||||||  | || ||| |||||||||||| || |||||| ||||| |||||||||||||||||| |||||| |||     
T  26159433 tcaatgtgaggaattaaccaagagagaatagatcgagatgcaaacaagaataaatcatgatgcgatcatatatgcaatctgagtttttgaatgatcgaac 26159532  T
Q  301 acaataatagtgtgagattgagagaaaagggtgcacacaccgagttaatttagaaactattgtgagcctttga 373  Q
    |||||||||||||||||||| ||| |||||||||||||   ||||||| ||||||||||||||||||||||||    
T  26159533 acaataatagtgtgagattgtgag-aaagggtgcacacggtgagttaaattagaaactattgtgagcctttga 26159604  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 9365511 - 9365582
Alignment:
Q  69 ctcatctaaaataccctagtttcactagcttccttcctcaaattgggatcagtctcatgaaaattgcaatccatat 144  Q
    ||||||||||||||||||||||||||||     |||||| |||||||||   |||||||||| |||||||||||||    
T  9365511 ctcatctaaaataccctagtttcactag----tttcctctaattgggattgatctcatgaaatttgcaatccatat 9365582  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 26159185 - 26159235
Alignment:
Q  161 gataactcttgattttttgtttgtacaccaggaattggcagcaattcaatt 211  Q
    |||||||||||| |||||| |||||  ||||||||||| ||||||||||||    
T  26159185 gataactcttgactttttgcttgtatgccaggaattggtagcaattcaatt 26159235  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 26636302 - 26636172
Alignment:
Q  243 aaacaagaataattcgtgatgc-atcatgtatgcaatctgagttttttaatgattgaaaacaataatagtgtgagattgagagaaaagggtgcacacacc 341  Q
    |||||||||||| || |||||| ||||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| ||       
T  26636302 aaacaagaataaatcatgatgcgatcatatatgcaatctgagtttttgaatgactgaaaataataatagtgtgagattgagag-aaagggtgcatacgat 26636204  T
Q  342 gagttaatttagaaactattgtgagcctttga 373  Q
    ||||||| ||||||||||||||||||||||||    
T  26636203 gagttaaattagaaactattgtgagcctttga 26636172  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 26636656 - 26636606
Alignment:
Q  161 gataactcttgattttttgtttgtacaccaggaattggcagcaattcaatt 211  Q
    ||||| |||||||||||||||||||  ||||||||||| | ||||||||||    
T  26636656 gataaatcttgattttttgtttgtatgccaggaattggaaacaattcaatt 26636606  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 265 - 373
Target Start/End: Complemental strand, 41474827 - 41474720
Alignment:
Q  265 atcatgtatgcaatctgagttttttaatgattgaaaacaataatagtgtgagattgagagaaaagggtgcacacaccgagttaatttagaaactattgtg 364  Q
    ||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||   ||||||| |||||||||||||||    
T  41474827 atcatatatgcgatctgagtttttgaatgactgaaaacaataatagtgtgagattgagag-aaagggtgcacacgatgagttaaattagaaactattgtg 41474729  T
Q  365 agcctttga 373  Q
    |||||||||    
T  41474728 agcctttga 41474720  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 41475098 - 41475048
Alignment:
Q  161 gataactcttgattttttgtttgtacaccaggaattggcagcaattcaatt 211  Q
    ||||| |||||||||||||||||||  ||||||||||| | ||||||||||    
T  41475098 gataaatcttgattttttgtttgtatgccaggaattggtaacaattcaatt 41475048  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 52282110 - 52282143
Alignment:
Q  69 ctcatctaaaataccctagtttcactagcttcct 102  Q
    |||||||||||||||||||||||||||| |||||    
T  52282110 ctcatctaaaataccctagtttcactagtttcct 52282143  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 373
Target Start/End: Complemental strand, 22560035 - 22559928
Alignment:
Q  265 atcatgtatgcaatctgagttttttaatgattgaaaacaataatagtgtgagattgagagaaaagggtgcacacaccgagttaatttagaaactattgtg 364  Q
    ||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||   ||||||| |||||||||||  ||    
T  22560035 atcatatatgcgatctgagtttttgaatgactgaaaacaataatagtgtgagattgagag-aaagggtgcacacgatgagttaaattagaaactatcatg 22559937  T
Q  365 agcctttga 373  Q
    |||||||||    
T  22559936 agcctttga 22559928  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 37065172 - 37065101
Alignment:
Q  69 ctcatctaaaataccctagtttcactagcttccttcctcaaattgggatcagtctcatgaaaattgcaatccatat 144  Q
    ||||||||||||||||||||||||||||     |||||| |||||||||   |||||||||| |||||||||||||    
T  37065172 ctcatctaaaataccctagtttcactag----tttcctctaattgggattgatctcatgaaatttgcaatccatat 37065101  T

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