View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19043_low_7 (Length: 365)
Name: NF19043_low_7
Description: NF19043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19043_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 33557821 - 33558158
Alignment:
| Q |
11 |
gatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgacgctgaatttgatgatcttattgaggctagcagagaagcaaaatctatta |
110 |
Q |
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| T |
33557821 |
gatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgatgctgaatttgatgatcttattgaggctagcagagaagcaaaatctatta |
33557920 |
T |
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| Q |
111 |
agaatccatttcagaatctccttttgagaaagaatagacctcaattcatcattggtgcaatttgtattccagcatttcaacaacttactggaaacaactc |
210 |
Q |
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| T |
33557921 |
agaatccatttcagaatctccttttgagaaagaatagacctcaattcatcattggtgcaatttgtattccagcatttcaacaacttactggaaacaactc |
33558020 |
T |
|
| Q |
211 |
tattctattctatgctcctgttattttccaaacaattggatttggctctggtgcatctctatattcatctgttattacaagtgttgctcttgttcttgct |
310 |
Q |
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| T |
33558021 |
tattctattctatgctcctgttattttccaaacaattggatttggctctggtgcatctctatattcatctgttattacaagtgttgctcttgttcttgct |
33558120 |
T |
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| Q |
311 |
acactcatctcaatggctttggttgacaagtttggtag |
348 |
Q |
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| T |
33558121 |
acactcatctcaatggctttggttgacaagtttggtag |
33558158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 33565038 - 33565375
Alignment:
| Q |
11 |
gatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgacgctgaatttgatgatcttattgaggctagcagagaagcaaaatctatta |
110 |
Q |
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| T |
33565038 |
gatgaaggaagagtagtgttggaaaagattagaggaaccagaaatgttgatgctgaatttgatgatcttattgaggctagcagagaagcaaaatctatta |
33565137 |
T |
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| Q |
111 |
agaatccatttcagaatctccttttgagaaagaatagacctcaattcatcattggtgcaatttgtattccagcatttcaacaacttactggaaacaactc |
210 |
Q |
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| T |
33565138 |
agaatccatttcagaatctccttttgagaaagaatagacctcaattcatcattggtgcaatttgtattccagcatttcaacaacttactggaaacaactc |
33565237 |
T |
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| Q |
211 |
tattctattctatgctcctgttattttccaaacaattggatttggctctggtgcatctctatattcatctgttattacaagtgttgctcttgttcttgct |
310 |
Q |
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| T |
33565238 |
tattctattctatgctcctgttattttccaaacaattggatttggctctggggcatctctatattcatctgttattacaagtgttgctcttgttcttgct |
33565337 |
T |
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| Q |
311 |
acactcatctcaatggctttggttgacaagtttggtag |
348 |
Q |
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| T |
33565338 |
acactcatctcaatggctttggttgacaagttcggtag |
33565375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 53 - 348
Target Start/End: Original strand, 43380229 - 43380524
Alignment:
| Q |
53 |
aatgttgacgctgaatttgatgatcttattgaggctagcagagaagcaaaatctattaagaatccatttcagaatctccttttgagaaagaatagacctc |
152 |
Q |
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|||||||| ||||||||||| |||||| |||| || |||||||||||| || | || ||||||||||||||||| || ||||| |||||||||||||| | |
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| T |
43380229 |
aatgttgatgctgaatttgaagatcttgttgaagcaagcagagaagcacaagccatcaagaatccatttcagaaccttcttttaagaaagaatagaccac |
43380328 |
T |
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| Q |
153 |
aattcatcattggtgcaatttgtattccagcatttcaacaacttactggaaacaactctattctattctatgctcctgttattttccaaacaattggatt |
252 |
Q |
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|||| | ||||||||| | |||||| ||||| |||||||| |||||||||||||| || || |||||||| ||||| |||||||||| ||||||| |
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| T |
43380329 |
aatttgtaattggtgcattggctattcctgcattccaacaactgactggaaacaactccatcctcttctatgcacctgtccttttccaaactcttggatt |
43380428 |
T |
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| Q |
253 |
tggctctggtgcatctctatattcatctgttattacaagtgttgctcttgttcttgctacactcatctcaatggctttggttgacaagtttggtag |
348 |
Q |
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||| |||| ||||||||| ||||| ||||| || || ||| |||| ||||||||||| || | ||||||||| || ||||||||||||||||| |
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| T |
43380429 |
tggatctgctgcatctctttattcttctgtcatcactagtattgcacttgttcttgccactttgatctcaatgttttatgttgacaagtttggtag |
43380524 |
T |
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