View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19044_high_1 (Length: 941)
Name: NF19044_high_1
Description: NF19044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19044_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 322 - 926
Target Start/End: Original strand, 5279749 - 5280354
Alignment:
| Q |
322 |
gaattcgaacttcaaaccttatatatattgtatattatccttatgagttaagtttacgaagacatatattcatttgtttaaaaataaaaaggataaattt |
421 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5279749 |
gaattcgaactcaaaaccttatatatattatgtattattcttatgagttaagtttacgaggacatatattcttttgtttaaaaataaaaaggataaattt |
5279848 |
T |
|
| Q |
422 |
tgactttttcttaatgctgaagacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaatatttt |
521 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5279849 |
tgactttttctcaatgctagagacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaatatttt |
5279948 |
T |
|
| Q |
522 |
cacacggcaaaattcaaagaccatttctgatttaccttttcaacaaataattaacttctgattttaattcaaattaagataa-gtttaggaactgttctc |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5279949 |
cacacggcaaaattcaaagaccatttctgatttaccttttcaacaaataattaacttctgattttaattcaaattaagataaagtttaggaactgttctc |
5280048 |
T |
|
| Q |
621 |
cttgtaattgttattttatattggaaaagctctaagctaaatcaaaataagatcagtttagactttgtcttagttctagagacttaattattattgcact |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5280049 |
cttgtaattgttattttatattggaaaagctctaagctaaatcaaaataagatcagtttagactttgtcttagttctagagacttaattataattgcact |
5280148 |
T |
|
| Q |
721 |
ctcttttgtatacttagattttatattatgtttggattgatcgaatgtaatgaagtgagatggaatggaatggtaaataattatcttttattgtttagat |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5280149 |
ctcttttgtatacttagattttatattatgtttggattgatcgaatgtaatgaagtgagatggaatggaatggtaaataattatcttttattgtttagat |
5280248 |
T |
|
| Q |
821 |
tttatcttttgcatcttccatcaatactcatgttacaattcttaattttcagcacaataccccatcaattcctcttgcttgctcagtcttgtttcttgcg |
920 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5280249 |
tttatcttttgcatcttccatcaatactcatgttacaattcttaattttcagcacaataccccatcaattcctcttgcttgctcagtcttgtttcttgcg |
5280348 |
T |
|
| Q |
921 |
ttctat |
926 |
Q |
| |
|
|||||| |
|
|
| T |
5280349 |
ttctat |
5280354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 656 - 728
Target Start/End: Complemental strand, 5281084 - 5281012
Alignment:
| Q |
656 |
gctaaatcaaaataagatcagtttagactttgtcttagttctagagacttaattattattgcactctcttttg |
728 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||| |
|
|
| T |
5281084 |
gctaaatcaacataagatcagtttagactttgtcttagttctggagactcaattataactgcactctcttttg |
5281012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 479 - 577
Target Start/End: Original strand, 5287824 - 5287928
Alignment:
| Q |
479 |
aatatttgagtaattggcacaatcgtac----cattactaa--tattttcacacggcaaaattcaaagaccatttctgatttaccttttcaacaaataat |
572 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||| ||| || |||||| |||||| || ||||| |||||||||||| |||||||||||||| |
|
|
| T |
5287824 |
aatattggagtaattggcacaatcgtacgaaccattactaaaatatgtttacacggaaaaattgaatgaccaattctgatttaccctttcaacaaataat |
5287923 |
T |
|
| Q |
573 |
taact |
577 |
Q |
| |
|
||||| |
|
|
| T |
5287924 |
taact |
5287928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 728
Target Start/End: Original strand, 5287984 - 5288037
Alignment:
| Q |
675 |
agtttagactttgtcttagttctagagacttaattattattgcactctcttttg |
728 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
5287984 |
agtttagactttgtcttagttgttgagacttaattataattgcactctcttttg |
5288037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 515
Target Start/End: Complemental strand, 5281374 - 5281283
Alignment:
| Q |
423 |
gactttttcttaatgctgaagacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaa |
515 |
Q |
| |
|
|||||||||||| | || |||||||||||||| || |||||||||| | ||||||||||| |||||||||||| | || |||||||||||| |
|
|
| T |
5281374 |
gactttttcttagttcttgagacttaattataacaat-agttggtggaatatggaaaatattcgagtaattggcagagtcataccattactaa |
5281283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 609
Target Start/End: Complemental strand, 5281187 - 5281104
Alignment:
| Q |
531 |
aaattcaaagaccatttctgatttaccttttcaacaaataattaac-----ttctgattttaattcaaattaagataagtttag |
609 |
Q |
| |
|
||||| ||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
5281187 |
aaattgaaacaccatctctgatttaccctttcaacaaataattaacaaaagagatgattttaattcaaattaagatcagtttag |
5281104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 1616920 - 1616739
Alignment:
| Q |
20 |
gatccttacactagctatcaagcttactatgagacaccattattgccattccctcaaccaccacctccagcatcggttcacccattttggactccaagtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
1616920 |
gatccttacactagctatcaagcttactatgagacaccattattgccattccctcaaccaccacctccagcatcggttcacccattttggacaccatgtt |
1616821 |
T |
|
| Q |
120 |
cgtgcactattatgtgaagcatttttagtttctttgggttatattaacctctattatcaaaagaggattataagatatgcaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1616820 |
cgtgcactattatgtgaagcatttttagtttctttgggttatattaacctctattatcaaaagaggattataagatatgcaa |
1616739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 6236697 - 6236840
Alignment:
| Q |
423 |
gactttttcttaatgctgaagacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattact--aatattt |
520 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| | ||||||||||| | ||||||||||| |||||||||||||| || |||||||||| |||| | |
|
|
| T |
6236697 |
gactttttcttatttcttgagacttaattataaacaatagttggtggaatatggaaaatattcgagtaattggcacagtcataccattactaaaatacgt |
6236796 |
T |
|
| Q |
521 |
tcacacggcaaaattcaaagaccatttctgatttaccttttcaa |
564 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
6236797 |
tcacacgacaaaattgaaagaccatttctgatttaccctttcaa |
6236840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 621 - 728
Target Start/End: Original strand, 6236944 - 6237051
Alignment:
| Q |
621 |
cttgtaattgttattttatattggaaaagctctaagctaaatcaaaataagatcagtttagactttgtcttagttctagagacttaattattattgcact |
720 |
Q |
| |
|
||||||||||| |||||||| ||| |||| ||| ||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||| |||||||| |
|
|
| T |
6236944 |
cttgtaattgtaattttataatggcaaagatcttgtctaaatcaaaatatgatcagtttagactttttcttggttctggagacttaattataattgcact |
6237043 |
T |
|
| Q |
721 |
ctcttttg |
728 |
Q |
| |
|
|||||||| |
|
|
| T |
6237044 |
ctcttttg |
6237051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 1616682 - 1616635
Alignment:
| Q |
258 |
ggttggagtgcctttgtacttatctgattttctatatattatttcttt |
305 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1616682 |
ggttcgagtgcctttgtacttatctgattttctatatattattacttt |
1616635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 40049898 - 40050014
Alignment:
| Q |
20 |
gatccttacactagctatcaagcttactatgagacaccattattgccattccctcaaccaccacctccagcatcggttcacccattttggactccaagtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40049898 |
gatccttacactagctatcaagcttactatgagacaccactattggcattccctcaaccaccaccaccagcatcggttcacccattttggactccaagtt |
40049997 |
T |
|
| Q |
120 |
cgtgcactattatgtga |
136 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40049998 |
cgtgcactattatgtga |
40050014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 40050080 - 40050146
Alignment:
| Q |
135 |
gaagcatttttagtttctttgggttatattaacctctattatcaaaagaggattataagatatgcaa |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40050080 |
gaagcatttttagtttctttgagttatattaacctctattatcaaaagaggattataagatatgcaa |
40050146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 656 - 736
Target Start/End: Complemental strand, 20352261 - 20352181
Alignment:
| Q |
656 |
gctaaatcaaaataagatcagtttagactttgtcttagttctagagacttaattattattgcactctcttttgtatactta |
736 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
20352261 |
gctaaatcaacataagatcagtttagactttgtcttagttgttgagacttaattataattgcactctcttttgtaaactta |
20352181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 442 - 608
Target Start/End: Complemental strand, 20352457 - 20352282
Alignment:
| Q |
442 |
agacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaatatt--ttcacacgg-caaaattcaa |
538 |
Q |
| |
|
|||||||||||||| || ||||||| || | ||||||||||| |||||||||||||| || || ||||||||| || ||||||||| ||||||| || |
|
|
| T |
20352457 |
agacttaattataacaat-agttggtagaatatggaaaatattcgagtaattggcacagtcatagcattactaaaatacgttcacacggacaaaattgaa |
20352359 |
T |
|
| Q |
539 |
agaccatttctgatttaccttttcaacaaataattaac-------ttctgattttaattcaaattaagataagttta |
608 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
20352358 |
agaccatctctgatttaccctttcaacaaataattaacaaaagggatctgattttaattcaaattaagatcagttta |
20352282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 479 - 577
Target Start/End: Original strand, 20359211 - 20359315
Alignment:
| Q |
479 |
aatatttgagtaattggcacaatcgtac----cattactaa--tattttcacacggcaaaattcaaagaccatttctgatttaccttttcaacaaataat |
572 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||| || ||||| |||||||||||| |||| ||||||||| |
|
|
| T |
20359211 |
aatattggagtaattggcacaatcgtacgaaccattactaaaatatgttcacacggcaaaattgaatgaccaattctgatttaccctttccacaaataat |
20359310 |
T |
|
| Q |
573 |
taact |
577 |
Q |
| |
|
||||| |
|
|
| T |
20359311 |
taact |
20359315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 747 - 804
Target Start/End: Complemental strand, 7510141 - 7510084
Alignment:
| Q |
747 |
tatgtttggattgatcgaatgtaatgaagtgagatggaatggaatggtaaataattat |
804 |
Q |
| |
|
||||||||||||||| |||| | |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
7510141 |
tatgtttggattgatggaatctgatgaagtgggatggaatggaatggtaactaattat |
7510084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 677 - 728
Target Start/End: Original strand, 20359373 - 20359426
Alignment:
| Q |
677 |
tttagactttgtcttagttcta--gagacttaattattattgcactctcttttg |
728 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
20359373 |
tttagactttgtcttagttgttttgagacttaattataattgcactctcttttg |
20359426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 747 - 801
Target Start/End: Complemental strand, 24020693 - 24020639
Alignment:
| Q |
747 |
tatgtttggattgatcgaatgtaatgaagtgagatggaatggaatggtaaataat |
801 |
Q |
| |
|
||||||||||||||| |||||| ||| ||| |||| |||||||||||||||||| |
|
|
| T |
24020693 |
tatgtttggattgatggaatgtgatggagttggatgtaatggaatggtaaataat |
24020639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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