View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19044_high_10 (Length: 250)
Name: NF19044_high_10
Description: NF19044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19044_high_10 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 6912553 - 6912753
Alignment:
| Q |
1 |
caagactccattcaaggttcattagcatctactcaactcagtgcagataatcacgaagatagatgttgagaaagtaaataaaatgttgtgggaatgtaaa |
100 |
Q |
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| T |
6912553 |
caagactccattcaaggttcattagcatctactcaactcagtgcagataatcacgaagatagatgttgagaaagtgaataaaatgttgtgggaatgtaaa |
6912652 |
T |
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| Q |
101 |
caagatatgaaaaatattaatatcattcaggatcagcatatcacccaattattaatactgaagtctataatgcttatataccttagccaaagtgttatca |
200 |
Q |
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| T |
6912653 |
caagatatgaaaaatattaatatcattcaggatcagcatatcacccaattattaatactgaagtctataatgcttatataccttagccaaagtgttatca |
6912752 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
6912753 |
t |
6912753 |
T |
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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 156923 - 156835
Alignment:
| Q |
92 |
gaatgtaaacaagatatgaaaaatattaatatcattcaggatcagcatatcacccaattattaatactgaagtctataatgcttatata |
180 |
Q |
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| T |
156923 |
gaatgtaaacaagatgtgaaaaataataattgcattcaagatcagcatatcatgcaattacaattactagaggctacaatgcttatata |
156835 |
T |
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