View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19044_high_2 (Length: 759)

Name: NF19044_high_2
Description: NF19044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19044_high_2
NF19044_high_2
[»] chr5 (1 HSPs)
chr5 (9-741)||(10200299-10201031)


Alignment Details
Target: chr5 (Bit Score: 721; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 9 - 741
Target Start/End: Complemental strand, 10201031 - 10200299
Alignment:
Q  9 gacatcatcacctgaatcaaagaagcagccgatcgagaagcaccagcaaaagcaccaataggtacaaacaaatgaggaaaagcaggagtacacatctcca 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10201031 gacatcataacctgaatcaaagaagcagccgatcgagaagcaccagcaaaagcaccaataggtacaaacaaatgaggaaaagcaggagtacacatctcca 10200932  T
Q  109 aaccaaacgcagcattttcaagaagatcagcaaacaatctccaccctttaggattaacatcaaaatgcctcccaaaatccgacaacaaaatcttactaag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10200931 aaccaaacgcagcattttcaagaagatcagcaaacaatctccaccctttaggattaacatcaaaatgcctcccgaaatccgacaacaaaatcttactaag 10200832  T
Q  209 atacccaattccatctttcagcacccaattaatagcagcagcagtaggaatagcccctttccccaatccaacagcatatagcaaagcttgagttgccaac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10200831 atacccaattccatctttcagcacccaattaatagcagcagcagtaggaatagcccctttccccaatccaacagcatatagcaaagcttgagttgccaac 10200732  T
Q  309 actccactcacctgacaagcaacaccttgaacacctctccataatgaatactctaaataatcacttgttacactatttggaaaaccttcaggtagcatca 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10200731 actccactcacctgacaagcaacaccttgaacacctctccataatgaatactctaaataatcacttgttacactatttggaaaaccttcaggtagcatca 10200632  T
Q  409 acctaactacaaattctctacatttattatacaaaaaggttggaacttgtgatgaatttaaagacgataattcagaaaataacccgggattggacgcaat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10200631 acctaactacaaattctctacatttattatacaaaaaggttggaacttgtgatgaatttaaagacgataattcagaaaataacccgggatttgacgcaat 10200532  T
Q  509 gaaaatatccttcaaattatcagggaatagctttatcaagtttccacctttgacttcgtaaatgggttgggtcaaaatatcatcttcagatgataaagaa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10200531 gaaaatatccttcaaattatcagggaatagctttatcaagtttccacctttgacttcgtaaatgggttgggtcaaaatatcatcttcagatgataaagaa 10200432  T
Q  609 cgggtttttgccattgcgagttggcagagacaaaatgtaacagaagagaatagtaaagtaaacaaaagggtgtaacgagaatttgaagaaggtgaagaag 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10200431 cgggtttttgccattgcgagttggcagagacaaaatgtaacagaagagaatagtaaagtaaacaaaagggtgtaacgagaatttgaagaaggtgaagaag 10200332  T
Q  709 aatcatctgagtcaaaagggttattgccccatg 741  Q
    |||||||||||||||||||||||||||||||||    
T  10200331 aatcatctgagtcaaaagggttattgccccatg 10200299  T

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