View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19044_low_10 (Length: 250)
Name: NF19044_low_10
Description: NF19044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19044_low_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 28129199 - 28128953
Alignment:
| Q |
4 |
atgtcgaagaatataggccaatgacaaaggtggcattatttgatatgcaaaatactaaatttgtgaaacgcttagggggcgtcaaagagaatgcagcttg |
103 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28129199 |
atgtggaagaaaataggccaatgacaaaggtggcattatttgatatgcaaaatactaaatttgtgaaacgcttagggggcgtcaaagagaatgcagcttg |
28129100 |
T |
|
| Q |
104 |
ttctcttttcagtgctactgacattacaatgaggtgggagcctgatgttcatctatcactaattgaacttgttctccagatgaaactaattgtacacaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28129099 |
ttctcttttcagtgctactgacattacaatgaggtgggagcctgatgttcatctatcactaattgaacttgttctccagatgaaactaattgtacacaat |
28129000 |
T |
|
| Q |
204 |
aagaagcttgaggaatgtggtaatgaacatgtggaagattcatctaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128999 |
aagaagcttgaggaatgtggtaatgaacatgtggaagattcatctaa |
28128953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 45832319 - 45832467
Alignment:
| Q |
27 |
acaaaggtggcattatttgatatgcaaaatactaaatttgtgaaacgcttagggggcgtcaaagagaatgcagcttgttctcttttcagtgctactgaca |
126 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||||||| || | ||| ||| | ||| ||| ||| | |||||||| |||||||||||||||| |
|
|
| T |
45832319 |
acaaaggtggcattgtttgatttgcaaaatgctaaatttgtacggcgatcaggtggcctaaaacagattgctgtctgttctctgttcagtgctactgaca |
45832418 |
T |
|
| Q |
127 |
ttacaatgaggtgggagcctgatgttcatctatcactaattgaacttgt |
175 |
Q |
| |
|
| || | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45832419 |
tcacccttaggtgggagcctgatgtacatctatcactaattgaacttgt |
45832467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University