View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19044_low_5 (Length: 416)
Name: NF19044_low_5
Description: NF19044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19044_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 123 - 412
Target Start/End: Complemental strand, 27612831 - 27612536
Alignment:
| Q |
123 |
atcatccatggatgttaacaaactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgc |
222 |
Q |
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| T |
27612831 |
atcatccatggatgttaacaaactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgc |
27612732 |
T |
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| Q |
223 |
aaccacagtctcaaaccacctacatctttatcttca------gcttcatcacttcgttctcgaaataaacggaacaagttaggacttcttcgtcttcatt |
316 |
Q |
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| T |
27612731 |
aaccacagtctcaaaccacctacatcttcatcttcatcttcagcttcatcacttcgttctccaaataaacggaacaagttaggacttcttcgtcttcatt |
27612632 |
T |
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| Q |
317 |
ctccgcggtttgtattcaaagctgctttaaactctcaacttattgttgttgttgtcgttgttacttcatctgctgtttcttggattcatctcactc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
27612631 |
ctccgcggtttgtattcaaagctgctttaaactctcaacttattgttgttgttgtcgttgttactttatctgctgtttcttggattcatttcactc |
27612536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 27612956 - 27612922
Alignment:
| Q |
7 |
catcatcagcaacaactagtttctctacctctggt |
41 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
27612956 |
catcatcagcaacaactagtttctctacctctggt |
27612922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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