View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19044_low_7 (Length: 300)

Name: NF19044_low_7
Description: NF19044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19044_low_7
NF19044_low_7
[»] chr4 (4 HSPs)
chr4 (147-224)||(9749759-9749836)
chr4 (234-284)||(9750405-9750455)
chr4 (75-115)||(9749696-9749736)
chr4 (1-37)||(9749638-9749674)
[»] chr2 (2 HSPs)
chr2 (147-224)||(45531540-45531617)
chr2 (147-221)||(34587489-34587563)
[»] chr5 (3 HSPs)
chr5 (147-221)||(619672-619746)
chr5 (147-221)||(35408059-35408133)
chr5 (177-224)||(3275565-3275612)
[»] chr1 (4 HSPs)
chr1 (34-99)||(52811235-52811300)
chr1 (147-224)||(27298479-27298556)
chr1 (1-38)||(52811173-52811210)
chr1 (231-277)||(31260887-31260933)
[»] chr8 (1 HSPs)
chr8 (147-224)||(28176873-28176950)
[»] chr7 (1 HSPs)
chr7 (45-99)||(2743474-2743528)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 9749759 - 9749836
Alignment:
Q  147 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagatatg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9749759 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagatatg 9749836  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 9750405 - 9750455
Alignment:
Q  234 aatttatccttcttgtaatgtatttagaggcctccttaatcttctttcatt 284  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9750405 aatttatccttcttgtaatgtctttagaggcctccttaatcttctttcatt 9750455  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 9749696 - 9749736
Alignment:
Q  75 ttattagcagcttcggcattgtcttcacattattaacagaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9749696 ttattagcagcttcggcattgtcttcacattattaacagaa 9749736  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9749638 - 9749674
Alignment:
Q  1 aagttgaaagattgtgcaggttaagtatcgaccccaa 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9749638 aagttgaaagattgtgcaggctaagtatcgaccccaa 9749674  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 45531617 - 45531540
Alignment:
Q  147 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagatatg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45531617 atctccttgggagaacgaagtcaatgccaattgccaacaattccattgaaacataacaagaaatgcctacaagatatg 45531540  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 34587563 - 34587489
Alignment:
Q  147 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagat 221  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  34587563 atctccttgggagaatgaagtcaatgtcaattgccaacaattccattgaaacataaaaagaaatacctacaagat 34587489  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 619672 - 619746
Alignment:
Q  147 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagat 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  619672 atctccttgggagaatgaagtcaatgccaattgccaacaattccattgaaacataaaaagaaatacctacaagat 619746  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 35408133 - 35408059
Alignment:
Q  147 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagat 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  35408133 atctccttgggagaatgaagtcaatgccaattgccaacaattccattgaaacataaaaagaaatacctacaagat 35408059  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 3275612 - 3275565
Alignment:
Q  177 ttgccaacaattcaattgaaacataacaagaaatgcctacaagatatg 224  Q
    |||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  3275612 ttgccaactattccataaaaacataacaagaaatgcctacaagatatg 3275565  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 52811235 - 52811300
Alignment:
Q  34 ccaatgagaacatgttaactgtccctgtccacttgctcacattattagcagcttcggcattgtctt 99  Q
    ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  52811235 ccaatgagaacatgtaaacggttcctgtccacttgctcacattattagcagcttcggcattgtctt 52811300  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 27298556 - 27298479
Alignment:
Q  147 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagatatg 224  Q
    ||||||||| ||||| |||| ||||||||||||||||  |||| ||  ||||||||||| ||||||||||||| ||||    
T  27298556 atctccttgtgagaatgaagccaatgccaattgccaaatattccataaaaacataacaacaaatgcctacaagttatg 27298479  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52811173 - 52811210
Alignment:
Q  1 aagttgaaagattgtgcaggttaagtatcgaccccaat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52811173 aagttgaaagattgtgcaggttaagtatcgaccccaat 52811210  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 31260933 - 31260887
Alignment:
Q  231 tagaatttatccttcttgtaatgtatttagaggcctccttaatcttc 277  Q
    |||||||| ||||||||||||||| |||||||||||| | |||||||    
T  31260933 tagaatttctccttcttgtaatgtctttagaggcctcttgaatcttc 31260887  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 28176950 - 28176873
Alignment:
Q  147 atctccttgggagaacgaagtcaatgccaattgccaacaattcaattgaaacataacaagaaatgcctacaagatatg 224  Q
    ||||||||| ||||| |||| ||||||||||||||||  |||| ||  ||||||||||| ||||||||||||| ||||    
T  28176950 atctccttgtgagaatgaagccaatgccaattgccaaatattccataaaaacataacaacaaatgcctacaagttatg 28176873  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 2743528 - 2743474
Alignment:
Q  45 atgttaactgtccctgtccacttgctcacattattagcagcttcggcattgtctt 99  Q
    |||| ||||||||||||||||||||||||||| || ||||| || ||||||||||    
T  2743528 atgtaaactgtccctgtccacttgctcacattgtttgcagcatcagcattgtctt 2743474  T

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