View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19045_high_18 (Length: 340)
Name: NF19045_high_18
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 21521876 - 21521553
Alignment:
| Q |
1 |
atcagccaaagtaaatgtaatatgtcttaaacaacagtttgctaactctggaaggtctagagtttctggaagttttacttcccattcacatctataaaat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21521876 |
atcagccaaagtaaatgtaacatgtcttaaacaatagtttgctaactctggaaggtctagagtttctggaagttttacttcacattcacatctataaaat |
21521777 |
T |
|
| Q |
101 |
gaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagggtattactttccttatcacgaaggtaggtgccaactttgaattttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21521776 |
gaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagcatattactttccttatcacgaaggtaggtgccaactttgaattttt |
21521677 |
T |
|
| Q |
201 |
ccacctcatggtttacagcacaattgatcatcttgctcaaaagtttagatggaacataccccttatgctcaacttcaatattacgtagacacgaggcact |
300 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
21521676 |
ccaccttatgatttacagcacaattgctcatcttgctcaaaagttttgatggaacatacccctgatgatcaacttcaatattacgtaggcacgaggcact |
21521577 |
T |
|
| Q |
301 |
agatttttcatgttgtttcaaaac |
324 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
21521576 |
agatttttcatggtgtttcaaaac |
21521553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 21537594 - 21537280
Alignment:
| Q |
4 |
agccaaagtaaatgtaatatgtcttaaacaacagtttgctaactctggaaggtctagagtttctggaagttttacttcccattcacatctataaaatgaa |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
21537594 |
agccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagtttctggaagttttacttcccatccatatgtataaaatgaa |
21537495 |
T |
|
| Q |
104 |
aggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagggtattactttccttatcacgaaggtaggtgccaactttgaatttttcca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21537494 |
aggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagggtattactttccttatcacgaaggtaggtgccaactttgaatttttcca |
21537395 |
T |
|
| Q |
204 |
cctcatggtttacagcacaattgatcatcttgctcaaaagtttagatggaacataccccttatgctcaacttcaatattacgtagacacgaggcactaga |
303 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |||||||||| |
|
|
| T |
21537394 |
cctcatgttttacagcacaattgatcatcttgctcaaaagtttagatggaacatacccctgatgctcaacttcaatgtt------acacaaggcactaga |
21537301 |
T |
|
| Q |
304 |
tttttcatgttgtttcaaaac |
324 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
21537300 |
tttttcaccgtgtttcaaaac |
21537280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 20426563 - 20426669
Alignment:
| Q |
98 |
aatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagggtattactttccttatcacgaaggtaggtgccaactttgaatt |
197 |
Q |
| |
|
|||||| |||| ||| | || ||||||||| |||| |||||||| |||||||||| ||||| |||||| | | |||||||||||||||||||||||| |
|
|
| T |
20426563 |
aatgaacggtccagataatttaaagaatgaggggaaaatattgattgaaaaagtagcatattattttcctcgttatgaaggtaggtgccaactttgaatt |
20426662 |
T |
|
| Q |
198 |
tttccac |
204 |
Q |
| |
|
||||||| |
|
|
| T |
20426663 |
tttccac |
20426669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 20427483 - 20427380
Alignment:
| Q |
98 |
aatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagggtattactttccttatcacgaaggtaggtgccaactttgaatt |
197 |
Q |
| |
|
||||||||||||||| | || ||| ||||| ||| |||||||| |||||| ||| |||||||||||| || | ||||||||||||||| |||||||| |
|
|
| T |
20427483 |
aatgaaaggtcaagaaaatttaaacaatgagaggaaaatattgattgaaaaattagcatattactttcctcattatgaaggtaggtgccaaatttgaatt |
20427384 |
T |
|
| Q |
198 |
tttc |
201 |
Q |
| |
|
|||| |
|
|
| T |
20427383 |
tttc |
20427380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University