View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_high_20 (Length: 326)
Name: NF19045_high_20
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 44142120 - 44141817
Alignment:
| Q |
17 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaac |
116 |
Q |
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| T |
44142120 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaac |
44142021 |
T |
|
| Q |
117 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc----aacaaaacnnnnnnnncattaatggttgtataa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |
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| T |
44142020 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcacattttctcaaaaaaaaaaaaaaaaaaaacattaatggttgtataa |
44141921 |
T |
|
| Q |
213 |
gatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgctatgcttagttgatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44141920 |
gatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgctatgcttagttgaag |
44141821 |
T |
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| Q |
313 |
atgt |
316 |
Q |
| |
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|||| |
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| T |
44141820 |
atgt |
44141817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 50062699 - 50062394
Alignment:
| Q |
16 |
caattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaa |
115 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50062699 |
caattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaa |
50062600 |
T |
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| Q |
116 |
cttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc-----aacaaaacnnnnnnnncattaatggttgtat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| | ||||||||||||| |
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| T |
50062599 |
cttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaaaaaaaaaaaaaaaaccttaatggttgtat |
50062500 |
T |
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| Q |
211 |
aagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgctatgcttagttga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
50062499 |
aagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcacaatgcagatatagtttattctggctatgcttagttga |
50062400 |
T |
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| Q |
311 |
tgatgt |
316 |
Q |
| |
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||||| |
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| T |
50062399 |
agatgt |
50062394 |
T |
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