View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_high_24 (Length: 302)

Name: NF19045_high_24
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_high_24
NF19045_high_24
[»] chr7 (6 HSPs)
chr7 (128-287)||(13416994-13417153)
chr7 (194-286)||(1986092-1986184)
chr7 (205-294)||(14076528-14076617)
chr7 (205-294)||(14386556-14386645)
chr7 (199-286)||(15572052-15572139)
chr7 (233-289)||(29431174-29431230)
[»] chr8 (1 HSPs)
chr8 (29-99)||(22773700-22773770)
[»] chr6 (5 HSPs)
chr6 (194-280)||(6921487-6921573)
chr6 (189-280)||(6948012-6948103)
chr6 (189-286)||(6943086-6943183)
chr6 (199-286)||(6954661-6954748)
chr6 (194-278)||(6935355-6935439)
[»] chr4 (1 HSPs)
chr4 (225-278)||(53774701-53774754)
[»] chr5 (1 HSPs)
chr5 (205-281)||(18964981-18965057)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 287
Target Start/End: Original strand, 13416994 - 13417153
Alignment:
Q  128 aatcataagaaaaacaaagacaaccattcaacatagaaagagctggatgaagtcttggacgatcacgtagatcttcgtcacaacatcgaggtagcaacaa 227  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||| ||||| ||||| |||| ||||| ||||| |||||||||||||||||||||||    
T  13416994 aatcataagaaaaacaaagacaatcattcaacatagaaagagtaggaggaagtattggaggatcgcgtagctcttcctcacaacatcgaggtagcaacaa 13417093  T
Q  228 ctgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaat 287  Q
    ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  13417094 ctgtgtatatgtctcagtccccaactcaaccgagataatcacaaattgttcaattgtaat 13417153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 1986092 - 1986184
Alignment:
Q  194 gtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaa 286  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||| |||| ||||||||  |||| |||||||| |||| |||||||| |||||    
T  1986092 gtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgtccccaaatcaagtgagataattacaagttgttcaactgtaa 1986184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 14076617 - 14076528
Alignment:
Q  205 tcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattattc 294  Q
    ||||||||| |||| || ||||| || ||||||||||||||||||||  |||| ||||||||||||||||| ||||| || | |||||||    
T  14076617 tcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattc 14076528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 14386645 - 14386556
Alignment:
Q  205 tcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattattc 294  Q
    ||||||||| |||| || ||||| || ||||||||||||||||||||  |||| ||||||||||||||||| ||||| || | |||||||    
T  14386645 tcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattc 14386556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 15572052 - 15572139
Alignment:
Q  199 tcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaa 286  Q
    ||||| ||||||||||||||||||| | | ||  ||||||| || ||||||||  |||||||||| ||||||||||||||||| ||||    
T  15572052 tcttcatcacaacatcgaggtagcatcgattgtctatatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaa 15572139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 29431174 - 29431230
Alignment:
Q  233 tatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatat 289  Q
    |||||||||||||||||||  ||||||| | ||| ||||| || |||||||||||||    
T  29431174 tatatgtctcagtccccaaatcaagcgaaagaataacaaactgctcaattgtaatat 29431230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 22773770 - 22773700
Alignment:
Q  29 tggagcctttcactaaagaaagagcccattgtaactggggctttgttatataactgaaaaatagacgaact 99  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  22773770 tggagcctttcactaaagaaagagcccgctataactggggctttgttatataactgaaaaatagacgaact 22773700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 6921487 - 6921573
Alignment:
Q  194 gtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaa 280  Q
    |||| ||||| |||||||||||||| |||||||| || ||||||||||| ||||||||  |||| ||||| ||||||||||||||||    
T  6921487 gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 6921573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 6948012 - 6948103
Alignment:
Q  189 atcacgtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaa 280  Q
    |||| |||| ||||| |||||||||||||| ||||||||| | |||||| |||| ||||||||  |||| ||||| ||||||| ||||||||    
T  6948012 atcatgtagctcttcatcacaacatcgagggagcaacaaccgtgtatatctctctgtccccaaatcaagtgagatcatcacaagttgttcaa 6948103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 6943086 - 6943183
Alignment:
Q  189 atcacgtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaa 286  Q
    |||| |||| ||||| ||||||||| |||| |||||||| |  ||||||||||| ||||||||  |||| ||||| ||||| |||||||||| |||||    
T  6943086 atcatgtagctcttcatcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagatcatcacgaattgttcaactgtaa 6943183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 6954661 - 6954748
Alignment:
Q  199 tcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaa 286  Q
    ||||| ||||||||||| || ||||||||||| ||||||||||| |||| ||   |||| ||||| |||||||||| ||||| |||||    
T  6954661 tcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaa 6954748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 6935355 - 6935439
Alignment:
Q  194 gtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttc 278  Q
    |||| ||||| |||||||||||||| |||||||| |  ||| ||||||| ||||||||  |||| ||||| ||||| ||||||||    
T  6935355 gtagctcttcatcacaacatcgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacgaattgttc 6935439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 53774754 - 53774701
Alignment:
Q  225 caactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttc 278  Q
    |||||| ||||||||||| ||| ||||  ||||||| |||||||||||||||||    
T  53774754 caactgtgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttc 53774701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 18964981 - 18965057
Alignment:
Q  205 tcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaat 281  Q
    ||||||||| |||| || |||||||| ||| |||||||  ||||||   |||| ||||||||||||||||| |||||    
T  18964981 tcacaacatggagggagtaacaactgtgtaaatgtctccatccccagatcaagtgagataatcacaaattgctcaat 18965057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University