View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_high_26 (Length: 297)
Name: NF19045_high_26
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 744811 - 745097
Alignment:
| Q |
1 |
ggacggtaaccatgaagaaccagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgt |
100 |
Q |
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| T |
744811 |
ggacggtaaccacgaagaaccagagatgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgt |
744910 |
T |
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| Q |
101 |
tgtccgatagctgcgcccggtccaaaattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgca |
200 |
Q |
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| T |
744911 |
tgtccgatagccgcgcccggtccaaaattcatgtactcaccataatacaaagtttttaaagcaaagtcaccattccattccaaccatccatgtggatgca |
745010 |
T |
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| Q |
201 |
catgatcacccatataggacaacatatatacagtcctagaatacattttccatggacgacccaaatatgtttcaatgctgccctttg |
287 |
Q |
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| T |
745011 |
catgatcacccatataggacaacatatatacagtcctagaatacattttccatggacgacccaaatatgtttcaatgctgccctttg |
745097 |
T |
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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 271
Target Start/End: Complemental strand, 41574059 - 41573814
Alignment:
| Q |
26 |
atgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagctgcgcccggtccaa |
125 |
Q |
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|||||||||||||| || ||||||| || |||| || || ||||| ||||||||||| ||||| || || ||||| || |||||| | || |||||| |
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| T |
41574059 |
atgaattgggccaccgtgaatctatttgcttccacggtggatgtaataacccgatacccaggccactttacacgttgcccaatagctccaccaggtccat |
41573960 |
T |
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| Q |
126 |
aattcatgtactcaccataatacaaagtgtttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggacaacat |
225 |
Q |
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| T |
41573959 |
aattcatgtattcaccataatacaaagtgtctaaagcaaatgttgtattccactctaaccatccacgtggatgtacatgatctcccatgtaagataacat |
41573860 |
T |
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| Q |
226 |
atatacagtcctagaatacattttccatggacgacccaaatatgtt |
271 |
Q |
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|| || || ||||| || | |||||||||||| || | ||||||| |
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| T |
41573859 |
gtacactgttctagagtatagtttccatggacggccaagatatgtt |
41573814 |
T |
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