View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_high_38 (Length: 261)
Name: NF19045_high_38
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 9137171 - 9137081
Alignment:
| Q |
162 |
tgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatgaattagaaatattcagcagttgaattatc |
252 |
Q |
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| T |
9137171 |
tgtcgcgaacaagtcaaggattttaaacatatgccaggctgaagggtttcgatttgcaaataaatcagaaaaattcagcagttgaattatc |
9137081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 9137340 - 9137401
Alignment:
| Q |
67 |
aattttacaagaatatcctttggttgttgatcgagaaggaacttctttaacaagccaaatga |
128 |
Q |
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| T |
9137340 |
aattttacaagaatatcctttggttgttgatcgagaagaaacttctttaacaagccaaatga |
9137401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 8040177 - 8040051
Alignment:
| Q |
127 |
gaaacaatgatttaaattcatgtgtcagatcaca--gtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatga |
224 |
Q |
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| T |
8040177 |
gaaacaatgattcaaattcatgaatcagctcacacagtgtctcgaacaagttaaggattttaaacatataccaggctgaatggcttcaatttgcaaacga |
8040078 |
T |
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| Q |
225 |
attagaaatattcagcagttgaattat |
251 |
Q |
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| T |
8040077 |
atcagcaaaaatcagcagttgaattat |
8040051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 8034781 - 8034688
Alignment:
| Q |
154 |
gatcacagtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatgaattagaaatattcagcagttgaa |
247 |
Q |
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| T |
8034781 |
gatcacagtgtctcaaacaagttaaggattctaaacataggccaggctgaatgacttcaattagcaaacgaatcagcaaaattcagcagttgaa |
8034688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 9137453 - 9137416
Alignment:
| Q |
18 |
tgtgtgagtatattttggttgaaactcgaaagaaatag |
55 |
Q |
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| T |
9137453 |
tgtgtgagtatatttttgttgaaactcgaaagaaatag |
9137416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 6035405 - 6035337
Alignment:
| Q |
153 |
agatcacagtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaa |
221 |
Q |
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| T |
6035405 |
agatcacacagtctcaaacaagtcgaggattttaaacaaacatcatggtgaagggtttcaatttgcaaa |
6035337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 8406070 - 8406141
Alignment:
| Q |
127 |
gaaacaatgatttaaattcatgtgtcagat--cacagtgtctcgaacaagtcaaggattttaaaaatacgcc |
196 |
Q |
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| T |
8406070 |
gaaaaaatgattcaaattcatgagtcagatcacacagtgtctcgaacaagttgagaattttgaacatacgcc |
8406141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 5478560 - 5478684
Alignment:
| Q |
127 |
gaaacaatgatttaaattcatgtgtcagatcacagtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatgaat |
226 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| || |||| ||| ||||||| | || |||||||||||||| |
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| T |
5478560 |
gaaacaatgattcaaattcatgagtcagatcacagtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgctt-tatttgcaaatgaat |
5478658 |
T |
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| Q |
227 |
tagaaatattcagcagttgaattatc |
252 |
Q |
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||||| |||||||||||||||||| |
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| T |
5478659 |
cagaaaacttcagcagttgaattatc |
5478684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 31402540 - 31402413
Alignment:
| Q |
127 |
gaaacaatgatttaaattcatgtgtcagatcaca--gtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatga |
224 |
Q |
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|||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||| | ||||||| ||| ||||||||| || |
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| T |
31402540 |
gaaacaatgattcaaattcatgaatcagatcacacagtgtctcgaacaagttgaggattttaaacatacgccatggtgaagggcttcgatttgcaaacga |
31402441 |
T |
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| Q |
225 |
attagaaatattcagcagttgaattatc |
252 |
Q |
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|| || || |||||| |||||||||||| |
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| T |
31402440 |
atcagcaaaattcagaagttgaattatc |
31402413 |
T |
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