View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_high_4 (Length: 577)
Name: NF19045_high_4
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 35646523 - 35646943
Alignment:
| Q |
18 |
tgttgttctgcatcgccgttgaatttaactgagttgtgtgcgacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaa |
117 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646523 |
tgttcttctgcatcgccgttgaatttaagtgagttgtgtgctacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaa |
35646622 |
T |
|
| Q |
118 |
aaggcaagagatttcacgagtggttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagt |
217 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646623 |
aaggtaagagatttcacaagtggttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagt |
35646722 |
T |
|
| Q |
218 |
aaatggtctttatggcaaggcagaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaggaccacattagtcgtagatctgatggagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646723 |
aaatggtctttatggcaaggcagaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaggaccacattagtcgtagatctgatggagat |
35646822 |
T |
|
| Q |
318 |
gttgaaaatgaggagcataatgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctt |
417 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646823 |
gttgagaatgaggagcataatgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctt |
35646922 |
T |
|
| Q |
418 |
tgatactggtatgtaacaata |
438 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35646923 |
tgatactggtatgtaacaata |
35646943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 30 - 441
Target Start/End: Original strand, 35655957 - 35656371
Alignment:
| Q |
30 |
tcgccgttgaatttaactgagttgtgtgcgacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaaaaggcaagagat |
129 |
Q |
| |
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||||| ||||| || || |||||||| | ||||||||||||||||||| |||||||||||| || ||||||| |||||||||||||| ||| | || || |
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| T |
35655957 |
tcgcccttgaacttgacagagttgtgctctacaattactaatgatatagtatgcagggtggctctgggaaaaagataccgtgaaggaagagggatgaaat |
35656056 |
T |
|
| Q |
130 |
ttcacgagtggttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtcttta |
229 |
Q |
| |
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|||| ||| ||||||||| ||||| ||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||| |
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| T |
35656057 |
ttcaggaggtgttgttggaatttggggagttgctgggtactgtatgtataggagactatataccttggcttgattggttgggaaaagttaatggttttta |
35656156 |
T |
|
| Q |
230 |
tggcaaggcagaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaggaccacattagtcg---tagatctgatgga---gatgttgaa |
323 |
Q |
| |
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| |||| ||||||||| || ||| |||||||| ||| | || |||| |||||||| ||||||||| | |||| || ||||| | ||||||| |
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| T |
35656157 |
tagcaaagcagaaaaagtggccaaacaattggatgaattttttgaggaagtcattgaggagcacattagtggtgatagaactaatggacatggtgttgaa |
35656256 |
T |
|
| Q |
324 |
aatgaggagcataatgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatac |
423 |
Q |
| |
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||| ||||| | |||||||||||||||||| ||||| ||||||||||| ||||||| ||||| | ||||||| || | |||||||||||||||||| |
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| T |
35656257 |
aat---gagcagagtgattttgtggatgttttgctttcgcttcaaaagactaatgctatgggcttcccaattgatagaatttcaatcaaggctttgatac |
35656353 |
T |
|
| Q |
424 |
tggtatgtaacaatatca |
441 |
Q |
| |
|
| ||| |||| ||||||| |
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|
| T |
35656354 |
ttgtaagtaataatatca |
35656371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 507 - 567
Target Start/End: Original strand, 35647012 - 35647072
Alignment:
| Q |
507 |
ccttttgttgcatatttattgctctagcatatatggtggattgaatatttgttttcctttg |
567 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35647012 |
ccttttgttgcatatttattgctctagcatatatggtggattgaatatttgttttcctttg |
35647072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 37 - 428
Target Start/End: Original strand, 35641616 - 35642004
Alignment:
| Q |
37 |
tgaatttaactgagttgtgtgcgacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtgaaggaaaaggcaagagatttcacga |
136 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||| |||| |||||||| || ||||||| ||| ||||| ||||| | ||| | || |
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| T |
35641616 |
tgaatttaacagagttgtgttctacaattactaatgatataacatgtagggtggctctaggaaaaagatatggtgaa---aaaggtggggtattgccgga |
35641712 |
T |
|
| Q |
137 |
gtggttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaag |
236 |
Q |
| |
|
| | ||||||||||||||||||| || ||| | | | |||||||||||||||||| |||||| | |||||||| || || |||||| | ||| ||||| |
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|
| T |
35641713 |
gctgatgttggagtttggagagttgttgggttcattctttataggagattatataccttggcttaaatggttgggtaaggttaatggtttctatagcaag |
35641812 |
T |
|
| Q |
237 |
gcagaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaggaccacat---tagtcgtagatctgatggagatgttgaaaatgaggagc |
333 |
Q |
| |
|
||||||||| || ||| ||||||||| ||| | || |||| |||||||| ||||| | || |||||||||||||| |||||| ||||| |
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|
| T |
35641813 |
gcagaaaaagtggctaaacatttggatgaattttttgagaaagttattgaggagcacatcagtggtagtagatctgatggacatgttg---gtgagggaa |
35641909 |
T |
|
| Q |
334 |
ataatgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggta |
428 |
Q |
| |
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| |||||||||||| |||| ||||| |||||||||| ||||| ||||||||| ||||||| ||||||||| |||| |||| |||||||| |
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| T |
35641910 |
ccagtgattttgtggacattttgctttcagttcaaaagagcaatgctgctggcttttcaattgatagaactgcaattaagggtttgttactggta |
35642004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 35673637 - 35673790
Alignment:
| Q |
140 |
gttgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggca-aggc |
238 |
Q |
| |
|
|||||| |||||||| | ||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| ||| ||| |
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|
| T |
35673637 |
gttgttagagtttgggggattattgggtagtgtatgtatgggagattatataccttggcttgattggttgggaaaagttgatcgtttttatagcaggggc |
35673736 |
T |
|
| Q |
239 |
agaaaaatgtgcaaaaattttggatgattttatagaacaagtaattgaggaccacat |
295 |
Q |
| |
|
|||||||||| | ||| ||||||||| ||| ||| ||||||||||||| ||||| |
|
|
| T |
35673737 |
agaaaaatgtacccaaaatttggatgagtttgtag---aagtaattgaggagcacat |
35673790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 35649054 - 35649157
Alignment:
| Q |
142 |
tgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaaggcaga |
241 |
Q |
| |
|
|||||||||||||||||||||||| || | | | |||||||||||| ||||| | ||| |||||||||| || || |||||| ||||| | |||||||| |
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|
| T |
35649054 |
tgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttatagtaaggcaga |
35649153 |
T |
|
| Q |
242 |
aaaa |
245 |
Q |
| |
|
|||| |
|
|
| T |
35649154 |
aaaa |
35649157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 35677134 - 35677237
Alignment:
| Q |
142 |
tgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaaggcaga |
241 |
Q |
| |
|
|||||||||||||||||||||||| || | | | |||||||||||| ||||| | ||| |||||||||| || || |||||| ||||| | |||||||| |
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|
| T |
35677134 |
tgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttatagtaaggcaga |
35677233 |
T |
|
| Q |
242 |
aaaa |
245 |
Q |
| |
|
|||| |
|
|
| T |
35677234 |
aaaa |
35677237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 35677032 - 35677107
Alignment:
| Q |
37 |
tgaatttaactgagttgtgtgcgacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtga |
112 |
Q |
| |
|
|||||||||| ||||||||| | ||| |||||||||||||| |||||||||||| || || |||| ||||||||| |
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|
| T |
35677032 |
tgaatttaacagagttgtgttctacagttactaatgatataacatgcagggtggttctaggcaaaagataccgtga |
35677107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 35649250 - 35649340
Alignment:
| Q |
338 |
tgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggta |
428 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||| || | |||| || ||||||| ||||||||| |||| |||| |||||||| |
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|
| T |
35649250 |
tgattttgtggacgttttgctttcagttcaaaagagcaatgatactagcttctcaattgatagaactgcaattaagggtttgttactggta |
35649340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 35677330 - 35677420
Alignment:
| Q |
338 |
tgattttgtggatgttttactttctgttcaaaagactgatgctattggcttttccattgataaaactgcaatcaaggctttgatactggta |
428 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| ||| || | |||| || ||||||| ||||||||| |||| |||| |||||||| |
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|
| T |
35677330 |
tgattttgtggacgttttgctttcagttcaaaagagcaatgatactagcttctcaattgatagaactgcaattaagggtttgttactggta |
35677420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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