View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_high_48 (Length: 218)

Name: NF19045_high_48
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_high_48
NF19045_high_48
[»] chr4 (14 HSPs)
chr4 (5-214)||(40179436-40179645)
chr4 (3-55)||(23292945-23292997)
chr4 (3-75)||(35157924-35157996)
chr4 (3-55)||(49431074-49431126)
chr4 (3-74)||(22234819-22234890)
chr4 (3-55)||(16073442-16073494)
chr4 (3-74)||(34306744-34306815)
chr4 (9-55)||(3947720-3947766)
chr4 (4-57)||(8423675-8423728)
chr4 (3-52)||(30982829-30982878)
chr4 (3-55)||(4157484-4157536)
chr4 (3-55)||(21945551-21945603)
chr4 (3-55)||(28964207-28964259)
chr4 (14-74)||(29205527-29205587)
[»] chr1 (17 HSPs)
chr1 (3-74)||(38078601-38078672)
chr1 (3-55)||(40258892-40258944)
chr1 (3-51)||(1815305-1815353)
chr1 (3-55)||(22515846-22515898)
chr1 (3-55)||(40917808-40917860)
chr1 (3-55)||(47989556-47989608)
chr1 (3-74)||(51410073-51410144)
chr1 (9-55)||(1486663-1486709)
chr1 (1-55)||(40181917-40181971)
chr1 (26-75)||(9630560-9630609)
chr1 (3-44)||(21530737-21530778)
chr1 (1-69)||(29163326-29163394)
chr1 (3-51)||(31694662-31694710)
chr1 (2-74)||(32461393-32461465)
chr1 (3-55)||(37598879-37598931)
chr1 (2-54)||(43492454-43492506)
chr1 (3-55)||(46348342-46348394)
[»] chr7 (7 HSPs)
chr7 (3-74)||(21880200-21880271)
chr7 (3-74)||(598256-598327)
chr7 (3-52)||(33994260-33994309)
chr7 (3-55)||(24339701-24339753)
chr7 (9-55)||(5409790-5409836)
chr7 (7-52)||(8234198-8234243)
chr7 (1-54)||(26022509-26022562)
[»] chr3 (9 HSPs)
chr3 (1-55)||(40993294-40993348)
chr3 (9-55)||(3631738-3631784)
chr3 (3-55)||(4987239-4987291)
chr3 (3-55)||(10955000-10955052)
chr3 (3-55)||(20503513-20503565)
chr3 (3-55)||(55401123-55401175)
chr3 (3-74)||(41961579-41961650)
chr3 (6-55)||(26492164-26492213)
chr3 (3-55)||(28812574-28812626)
[»] chr2 (8 HSPs)
chr2 (3-55)||(2438678-2438730)
chr2 (3-57)||(30404807-30404861)
chr2 (3-55)||(18840972-18841024)
chr2 (1-52)||(5367238-5367289)
chr2 (4-51)||(27084318-27084365)
chr2 (3-55)||(28596517-28596569)
chr2 (3-55)||(37419802-37419854)
chr2 (3-55)||(38117118-38117170)
[»] chr6 (14 HSPs)
chr6 (3-74)||(28715343-28715414)
chr6 (3-76)||(28152146-28152219)
chr6 (3-55)||(4877991-4878042)
chr6 (3-52)||(32978861-32978910)
chr6 (3-51)||(10339077-10339125)
chr6 (3-54)||(16766756-16766807)
chr6 (4-54)||(5000575-5000625)
chr6 (3-55)||(5970056-5970108)
chr6 (3-55)||(8365467-8365519)
chr6 (3-55)||(8714039-8714091)
chr6 (1-57)||(12627534-12627590)
chr6 (1-33)||(19040398-19040430)
chr6 (1-33)||(31579208-31579240)
chr6 (3-55)||(34595182-34595234)
[»] chr5 (13 HSPs)
chr5 (3-55)||(15382533-15382585)
chr5 (1-69)||(30502333-30502401)
chr5 (1-69)||(30542676-30542744)
chr5 (3-55)||(7677764-7677816)
chr5 (3-55)||(19579760-19579812)
chr5 (3-54)||(28588634-28588685)
chr5 (3-74)||(43564929-43565000)
chr5 (9-55)||(43001859-43001905)
chr5 (3-52)||(21522809-21522858)
chr5 (3-52)||(21533375-21533424)
chr5 (3-52)||(21542089-21542138)
chr5 (3-47)||(11084347-11084391)
chr5 (3-55)||(21191015-21191067)
[»] scaffold0050 (1 HSPs)
scaffold0050 (3-54)||(70326-70377)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-74)||(241653-241724)
[»] chr8 (12 HSPs)
chr8 (6-52)||(31557047-31557093)
chr8 (3-55)||(36450713-36450765)
chr8 (3-50)||(5813640-5813687)
chr8 (1-52)||(33405346-33405397)
chr8 (1-55)||(126306-126360)
chr8 (1-55)||(44462154-44462208)
chr8 (1-55)||(44469687-44469741)
chr8 (4-69)||(24727686-24727751)
chr8 (3-55)||(22652035-22652087)
chr8 (4-52)||(29447061-29447109)
chr8 (3-55)||(29510252-29510304)
chr8 (3-55)||(40332239-40332291)
[»] scaffold0008 (1 HSPs)
scaffold0008 (3-55)||(263320-263372)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-55)||(92875-92922)
[»] scaffold0697 (1 HSPs)
scaffold0697 (3-44)||(1692-1733)
[»] scaffold0652 (1 HSPs)
scaffold0652 (3-55)||(421-473)
[»] scaffold0136 (1 HSPs)
scaffold0136 (3-55)||(3797-3849)
[»] scaffold0086 (1 HSPs)
scaffold0086 (3-55)||(2987-3039)
[»] scaffold0053 (1 HSPs)
scaffold0053 (3-51)||(8846-8894)
[»] scaffold0019 (1 HSPs)
scaffold0019 (3-55)||(71784-71836)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 40179645 - 40179436
Alignment:
Q  5 gtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatagtaaatacatgacattagttaaacggtctaa 104  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40179645 gtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccgagaattattcgtgcttgatagtaaatacatgacattagttaaacggtctaa 40179546  T
Q  105 ataacaaaattctgaagttagtacataaatggaaaatgctgcatattcaaaatgcatgactctgtatggtaattaaaaagttacaagtcatatatgaatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40179545 ataacaaaattctgaagttagtacataaatggaaaatgctgcatattcaaaatgcatgactctgtatggtaattaaaaagttacaagtcatatatgaatt 40179446  T
Q  205 tcttctcact 214  Q
    |||| |||||    
T  40179445 tcttatcact 40179436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 23292997 - 23292945
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| ||| | ||||| ||||||||||||||||||    
T  23292997 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgag 23292945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 35157996 - 35157924
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatagt 75  Q
    ||||||||||| |||||||||||||| ||||||| | |||||| ||||||||||| | | ||||||| |||||    
T  35157996 gtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcatagt 35157924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 49431074 - 49431126
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||| |||||||    
T  49431074 gtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgag 49431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 22234890 - 22234819
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    ||||||||||| |||||||||| ||| | ||||||||||||  |||||||||||| | ||||||||| ||||    
T  22234890 gtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcatag 22234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16073442 - 16073494
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||||||||||| |||||| | |||| | |||||||||||||||||    
T  16073442 gtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgag 16073494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 34306815 - 34306744
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    |||||||||||||||||||||| ||| | |||||  ||||||||||||| ||| | | ||||||||| ||||    
T  34306815 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcatag 34306744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 3947766 - 3947720
Alignment:
Q  9 gtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||| ||| | |||||||||||| |||||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgag 3947720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 8423728 - 8423675
Alignment:
Q  4 tgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaa 57  Q
    ||||||||||||||||||||  ||| | ||||| |||||||||||||| |||||    
T  8423728 tgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaa 8423675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 30982878 - 30982829
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    ||||||||||| |||||||||| ||| | ||||| |||||||||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatcc 30982829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 4157484 - 4157536
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||||| | |||||  || ||||||||| ||||    
T  4157484 gtgtcggtgtcggacacgacacatgtccgacaccgagaaacgcctaattcgag 4157536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 21945551 - 21945603
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||| ||||||||| | |||||   ||||||||||||||||    
T  21945551 gtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccgag 21945603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 28964259 - 28964207
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||| |||||||||||||||||| | | ||||  ||||||||||||||||||    
T  28964259 gtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgag 28964207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 29205527 - 29205587
Alignment:
Q  14 ggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    ||||||||||||||| | ||||  |||||||||||||||||| | | ||||||||| ||||    
T  29205527 ggacacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 38078672 - 38078601
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  38078672 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatag 38078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40258944 - 40258892
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||| |||||||||| ||| | ||||||||||||||||||||||||    
T  40258944 gtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgag 40258892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 1815305 - 1815353
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatc 51  Q
    ||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  1815305 gtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatc 1815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 22515898 - 22515846
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||| | | |||||  |||||||||||||||||    
T  22515898 gtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgag 22515846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 40917808 - 40917860
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgag 40917860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 47989556 - 47989608
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||||||||||||||||||   ||| | ||||||||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgag 47989608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 51410073 - 51410144
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    |||||||||||||||||||||| | | | |||||  |||||||||||||| || | ||||||||||| ||||    
T  51410073 gtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcatag 51410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 1486709 - 1486663
Alignment:
Q  9 gtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||| ||| | ||||| ||||||||||||||||||    
T  1486709 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgag 1486663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40181917 - 40181971
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||| |||||||||||||| |||| ||| | ||||| ||||||||||||||||||    
T  40181917 atgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgag 40181971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 9630609 - 9630560
Alignment:
Q  26 tgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatagt 75  Q
    |||||||||| ||||||||||||||||||| | | ||||||||| |||||    
T  9630609 tgttcaacacgaggacacgcctaatccgaggagtgttcgtgcttcatagt 9630560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 21530737 - 21530778
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacg 44  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  21530737 gtgtcggtgtcggacacgacacatgtccgacactaggacacg 21530778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29163394 - 29163326
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgctt 69  Q
    |||||||||||||||||||||||| ||    ||||| ||||||| |||||| ||||| | |||||||||    
T  29163394 atgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgctt 29163326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 31694710 - 31694662
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatc 51  Q
    ||||||||||||||||| |||||| ||| ||||| | ||||||||||||    
T  31694710 gtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatc 31694662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  2 tgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    ||||||||||||||||||||||| |||   ||||  ||||||||||||||| |||| | | ||||||| ||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37598879 - 37598931
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| ||| | |||   ||||||||||||||||||    
T  37598879 gtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgag 37598931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 43492506 - 43492454
Alignment:
Q  2 tgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccga 54  Q
    |||||||||||| ||||| |||||||| | ||||| | |||||||||||||||    
T  43492506 tgtgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatccga 43492454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 46348394 - 46348342
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| ||| | |||||  ||||||||| |||||||    
T  46348394 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgag 46348342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 21880200 - 21880271
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||| | | ||||||| ||||    
T  21880200 gtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 598256 - 598327
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    ||||||||||| |||||||||| ||| | ||||| |||||||||||||||||||| | | ||||||| ||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 33994260 - 33994309
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    ||||||||||| |||||||||||||| |||||||  ||||||||||||||    
T  33994260 gtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatcc 33994309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 24339701 - 24339753
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| | | | ||||| ||||||||||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgag 24339753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 5409836 - 5409790
Alignment:
Q  9 gtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||| ||| | ||||| ||||||||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgag 5409790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 8234198 - 8234243
Alignment:
Q  7 cggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    |||||||||||||||||||||| | |||||  ||||||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatcc 8234243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26022562 - 26022509
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccga 54  Q
    |||||||||||||| |||||||| ||| | |||| || ||||||||||||||||    
T  26022562 atgtgtcggtgtcgaacacgacatatgctgaacaacaagacacgcctaatccga 26022509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40993348 - 40993294
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  40993348 atgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgag 40993294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 3631738 - 3631784
Alignment:
Q  9 gtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||    
T  3631738 gtgtcggacacgacacatgtccgacaccaggacacgcctagtccgag 3631784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 4987291 - 4987239
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgag 4987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 10955000 - 10955052
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| ||| | ||||  ||||||||||||||||||    
T  10955000 gtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgag 10955052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 20503513 - 20503565
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||| |||||||||||||||   ||||| ||||||||||||||||||    
T  20503513 gtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgag 20503565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 55401123 - 55401175
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| ||| | |||||  |||||||||||||||||    
T  55401123 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgag 55401175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 41961650 - 41961579
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    |||||||| ||||||||||||| ||| | ||||  |||||||||||||||||||| | | ||||||| ||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 26492213 - 26492164
Alignment:
Q  6 tcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||   |||||| |||||| ||||||||||    
T  26492213 tcggtgtcggacacgacacatgtctgacaccaagacacgtctaatccgag 26492164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 28812574 - 28812626
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||| |||||| ||||||| |||||| | ||| ||||||||||||||||||||    
T  28812574 gtgttggtgtcagacacgatacatgtccgacagcaggacacgcctaatccgag 28812626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 2438730 - 2438678
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  2438730 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgag 2438678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 30404861 - 30404807
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaa 57  Q
    ||||||| |||||||||||||||||| | ||||||||||| |||||||| |||||    
T  30404861 gtgtcggcgtcggacacgacacatgtccgacaccaggacatgcctaatctgagaa 30404807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18841024 - 18840972
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||| |||||||||||||| | ||||| |||||| |||||||||||    
T  18841024 gtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgag 18840972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5367238 - 5367289
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    |||||||||||||||||||||||||| | | || || |||||||||||||||    
T  5367238 atgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatcc 5367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 27084318 - 27084365
Alignment:
Q  4 tgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatc 51  Q
    ||||||||||||||||||||| ||| |||||||  |||||||||||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatc 27084365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 28596517 - 28596569
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| ||| | ||||  |||||| |||||||||||    
T  28596517 gtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgag 28596569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37419802 - 37419854
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||  | ||| | ||||| ||||||||||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgag 37419854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38117170 - 38117118
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||| |||||||||||| |||| ||| | ||||| ||||||||||||||||||    
T  38117170 gtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgag 38117118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 28715343 - 28715414
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| | | ||||||| ||||    
T  28715343 gtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 28152146 - 28152219
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatagta 76  Q
    |||||||||||||||||||||| ||| | ||||| ||||| |||||||||||| | | ||||||||| ||||||    
T  28152146 gtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatagta 28152219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 4877991 - 4878042
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  4877991 gtgtcggtgtcggacacgacacatgtccgaca-caggacacgcctaatccgag 4878042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 32978910 - 32978861
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    |||||||||||||||||||||||||| | ||||| ||||||| |||||||    
T  32978910 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatcc 32978861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 10339125 - 10339077
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatc 51  Q
    |||||||||||||||||||||||||| | ||||  ||||||||||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatc 10339077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 16766756 - 16766807
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccga 54  Q
    ||||||||||||||||| |||| ||| | ||||| |||||||||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccga 16766807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 5000625 - 5000575
Alignment:
Q  4 tgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccga 54  Q
    |||||||||| |||||||||||| | | ||||||||||||| |||||||||    
T  5000625 tgtcggtgtcagacacgacacatatccgacaccaggacacgtctaatccga 5000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5970108 - 5970056
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||| | | ||| | ||||||||| ||||||||    
T  5970108 gtgtcggtgtcggacacgacacatttccgacatcgggacacgcccaatccgag 5970056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 8365519 - 8365467
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||| ||||||||||||| ||| | ||||  ||||||||||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgag 8365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 8714039 - 8714091
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||||| | | ||| | ||||||||| ||||||||    
T  8714039 gtgtcggtgtcggacacgacacatttccgacatcgggacacgcccaatccgag 8714091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12627590 - 12627534
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaa 57  Q
    |||||||| |||||||||| |||||||| | |||||  ||||| |||||||||||||    
T  12627590 atgtgtcgatgtcggacaccacacatgtccgacaccgagacactcctaatccgagaa 12627534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19040398 - 19040430
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaac 33  Q
    ||||||| |||||||||||||||||||||||||    
T  19040398 atgtgtctgtgtcggacacgacacatgttcaac 19040430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31579240 - 31579208
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaac 33  Q
    |||||||||||||||||||||||||||| ||||    
T  31579240 atgtgtcggtgtcggacacgacacatgtccaac 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 34595182 - 34595234
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||| |||   ||||| |||||| |||||||||||    
T  34595182 gtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgag 34595234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 15382533 - 15382585
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||| ||||||||||||||| | ||||| ||||||||||||||||||    
T  15382533 gtgtcggtgttggacacgacacatgtccgacaccgggacacgcctaatccgag 15382585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30502401 - 30502333
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgctt 69  Q
    |||||||||||||||||||||||||||| | ||||  ||||| ||||||||| || ||| |||||||||    
T  30502401 atgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgctt 30502333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30542744 - 30542676
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgctt 69  Q
    |||||||||||||||||||||||||||| | ||||  ||||| ||||||||| || ||| |||||||||    
T  30542744 atgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgctt 30542676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7677764 - 7677816
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||| |||||| ||||||| | ||||| ||||||||||||||||||    
T  7677764 gtgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatccgag 7677816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19579760 - 19579812
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||| ||||||||||||||| ||||  |||||| ||||||||||||||||||    
T  19579760 gtgtcagtgtcggacacgacatatgtctaacaccgggacacgcctaatccgag 19579812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 28588685 - 28588634
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccga 54  Q
    |||||||||||||||||||||||| |   |||||||||||||| ||||||||    
T  28588685 gtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccga 28588634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 43564929 - 43565000
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    |||||||||||||||||||||  ||| | || || |||||||||||||||||||| | | ||||||| ||||    
T  43564929 gtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 43001859 - 43001905
Alignment:
Q  9 gtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||||    
T  43001859 gtgtcggacacgacacgtgtcaaacacctggacacgcctaatccgag 43001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21522809 - 21522858
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    |||||||||||||||||||||| ||| |  |||| |||||||||||||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatcc 21522858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21533375 - 21533424
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    |||||||||||||||||||||| ||| |  |||| |||||||||||||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatcc 21533424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21542089 - 21542138
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    |||||||||||||||||||||| ||| | ||||| ||||||||| |||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatcc 21542138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 11084347 - 11084391
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcct 47  Q
    |||||||||| |||||||||||||||  |||||| ||||||||||    
T  11084347 gtgtcggtgttggacacgacacatgtcgaacaccgggacacgcct 11084391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21191067 - 21191015
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||||||||| |||| ||| | || || ||||||||||||||||||    
T  21191067 gtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgag 21191015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 70326 - 70377
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccga 54  Q
    |||||||||||||||||||||| ||| | ||||||||||| |||||||||||    
T  70326 gtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccga 70377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 241653 - 241724
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgcttgatag 74  Q
    |||| ||||||||||||||||| ||| | ||||| |||||||||||||||||||| | | ||||||| ||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 31557047 - 31557093
Alignment:
Q  6 tcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||    
T  31557047 tcggtgtcagacacgacacatgtccgacaccaggacacgcctaatcc 31557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 36450765 - 36450713
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||| ||||||||||||||| | ||| | ||||||||||||||||||||||||    
T  36450765 gtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgag 36450713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 5813640 - 5813687
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaat 50  Q
    |||||||||||||||||||||| ||| | ||||| |||||||||||||    
T  5813640 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaat 5813687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33405397 - 33405346
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    ||||||||||||||||||||||||||||   ||||| ||||||| |||||||    
T  33405397 atgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatcc 33405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 126360 - 126306
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||| |||||||||||||||| ||| ||| ||| ||||||| ||||||||||    
T  126360 atgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgag 126306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44462208 - 44462154
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||||| ||||||| |||||| | ||||| ||||||| ||||||||||    
T  44462208 atgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccgag 44462154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44469741 - 44469687
Alignment:
Q  1 atgtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||||| ||||||| |||||| | ||||| ||||||| ||||||||||    
T  44469741 atgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccgag 44469687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 24727751 - 24727686
Alignment:
Q  4 tgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgagaattattcgtgctt 69  Q
    ||||||| ||| ||| ||||| ||| ||| ||||| |||||||||||||||||| | |||||||||    
T  24727751 tgtcggtatcgaacatgacacgtgtccaataccagaacacgcctaatccgagaagtgttcgtgctt 24727686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22652035 - 22652087
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||  ||| | ||||| ||||||| ||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgag 22652087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 29447109 - 29447061
Alignment:
Q  4 tgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatcc 52  Q
    ||||||||||||||||||||  |||   |||||||||||||||||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcc 29447061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29510304 - 29510252
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||| | ||| | ||||| |||||| |||||||||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgag 29510252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 40332239 - 40332291
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||| ||||||||||| ||| | ||||| |||| |||||||||||||    
T  40332239 gtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgag 40332291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 263372 - 263320
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||| |||||||||| ||||| | |||| |||||||||||||||||    
T  263372 gtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgag 263320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 92875 - 92922
Alignment:
Q  8 ggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||||    
T  92875 ggtgtcggacacgacacatgtcggacacctggacacgcctaatccgag 92922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 1692 - 1733
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacg 44  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  1692 gtgtcggtgtcggacacgacacatgtccgacactaggacacg 1733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 473 - 421
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||||||||||||||| | ||| | ||||| |||||| |||||||||||    
T  473 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgag 421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3849 - 3797
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||| ||||||||||||||||||||| | ||| |  |||||||||||||||||    
T  3849 gtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgag 3797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 2987 - 3039
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    |||||||| || |||||||||| ||||| ||||| | ||||||||||||||||    
T  2987 gtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatccgag 3039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 8846 - 8894
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatc 51  Q
    |||||||||||||||||||||| ||| | |||||  |||||||||||||    
T  8846 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatc 8894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 71784 - 71836
Alignment:
Q  3 gtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgag 55  Q
    ||||||||||||||||| |||| ||| | ||||| ||||||| ||||||||||    
T  71784 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgag 71836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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