View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_high_5 (Length: 461)
Name: NF19045_high_5
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 37915023 - 37914583
Alignment:
| Q |
18 |
agagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37915023 |
agagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttcatcaaggt |
37914924 |
T |
|
| Q |
118 |
aacgtatgtaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgag |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914923 |
aacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgag |
37914824 |
T |
|
| Q |
218 |
aataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaannnnnnntttgcagtaaaaccaagaaatgtca |
317 |
Q |
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| T |
37914823 |
aataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaagggggggtttgcagtaaaaccaagaaatgtca |
37914724 |
T |
|
| Q |
318 |
aagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttcgttatgat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914723 |
aagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttcgttatgat |
37914624 |
T |
|
| Q |
418 |
agaatttgatctcgtgatgatgaagcatgtctgtgctgctc |
458 |
Q |
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| T |
37914623 |
agaatttgatctcgtgatgatgaagcatgtttgtgttgctc |
37914583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 432
Target Start/End: Complemental strand, 37906856 - 37906446
Alignment:
| Q |
22 |
ggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggtaacg |
121 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |
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| T |
37906856 |
ggtgccagttttgagcatcttgtgaatcagatacgaggatgttgaagtctgctgaggattcagctacagtgaaggaaatagagtcttcatcaaggtaacg |
37906757 |
T |
|
| Q |
122 |
tatgtaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaata |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906756 |
tatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaata |
37906657 |
T |
|
| Q |
222 |
ggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaannnnnnntttgcagtaaaaccaagaaatgtcaaaga |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||| |||| |
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| T |
37906656 |
ggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatacgtttaacagtgggttgacagtaaaaccatgaaatgtcgaaga |
37906557 |
T |
|
| Q |
322 |
aagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttcgttatgatagaa |
421 |
Q |
| |
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| |||||||||| | | |||||||||||||||||| |||||||||||| || ||| | || ||||| |||||||| || ||||| | ||| |||| ||| |
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| T |
37906556 |
aggtgagagggagtgttgttggtgatggaagtgaatttggtggtggtgcaacttggctatgttctattaccttcatcataactgtgttgttgtgattgaa |
37906457 |
T |
|
| Q |
422 |
tttgatctcgt |
432 |
Q |
| |
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|||| |||||| |
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| T |
37906456 |
tttggtctcgt |
37906446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 37961212 - 37961472
Alignment:
| Q |
22 |
ggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggtaacg |
121 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |
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| T |
37961212 |
ggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacg |
37961311 |
T |
|
| Q |
122 |
tatgtaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaata |
221 |
Q |
| |
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|||||||||| ||||| |||||||||||||||| ||||||||| |||| || || ||||||||| | ||||||| ||||||||||||||||||||| |
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| T |
37961312 |
tatgtaaggatcggtgttttgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatg |
37961411 |
T |
|
| Q |
222 |
ggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtt |
282 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |||| |
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| T |
37961412 |
ggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgtt |
37961472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 37961526 - 37961584
Alignment:
| Q |
339 |
gttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcat |
397 |
Q |
| |
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|||||||||| ||||||| |||||||||||| || |||| | || |||||||||||||| |
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| T |
37961526 |
gttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
37961584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 3783130 - 3782862
Alignment:
| Q |
20 |
agggtgccaattttgagcatcttgtgaa---tcagatatgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaagg |
116 |
Q |
| |
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||||||| |||||| | ||||||||||| || || || |||| |||||||| |||| |||||||||| ||||||||||||| ||||||| || ||| |
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| T |
3783130 |
agggtgcaaatttttaacatcttgtgaagaatctgaaataaggaggttgaagtttgctaaggattcagcaatggtgaaggagagagagtctccattgagg |
3783031 |
T |
|
| Q |
117 |
taacgtatgtaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttga |
216 |
Q |
| |
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|| ||||| ||||| ||| || | ||||| || ||| || || || ||||| | | | ||||||||||||| ||||| | |||||| |||||||||| |
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| T |
3783030 |
tagcgtatataagggggaacattttcggaatgtgaaggaattataagattggaagagtatggaaagaagtgttcgagggtgatggaaagagagtgtttga |
3782931 |
T |
|
| Q |
217 |
gaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaa |
285 |
Q |
| |
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|||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3782930 |
gaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggtagaagaagatgcgtttaa |
3782862 |
T |
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