View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_high_50 (Length: 214)
Name: NF19045_high_50
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 36401113 - 36400928
Alignment:
| Q |
10 |
agcataggcaaaaagaggaactaaagtggctagagttcttgagattgctaatcttatgagagcagttggaagacctcctgctaaaaaatctttcttctaa |
109 |
Q |
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| T |
36401113 |
agcagaggcaaaaagaggaactaaagtggctagagttcttgagattgctaatcttatgagagcagttggaagacctcctgctaaaaaatctttcttctaa |
36401014 |
T |
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| Q |
110 |
gttaattttcatattttaaaaattgaaaacttttttaggcacnnnnnnnnnnggataataatttttcctttttaattagttaaaga |
195 |
Q |
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| T |
36401013 |
gttagttttcatattttaaaaattgaaaacttttttaggcacaaaaaaaaaaggataataatttttcctttttaattagttaaaga |
36400928 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 21427581 - 21427486
Alignment:
| Q |
15 |
aggcaaaaagaggaactaaagtggctagagttcttgagattgctaatcttatgagagcagttggaagacctcctgctaaaaaatctttcttctaag |
110 |
Q |
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|||| ||||||||||||||| | | || |||||||||||||| || |||||||||| ||||||||| ||||| | |||| ||| ||||| |||| |
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| T |
21427581 |
aggctaaaagaggaactaaaatttcaagggttcttgagattgccaaccttatgagagttgttggaagagctccttccaaaagatccttcttttaag |
21427486 |
T |
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