View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_high_8 (Length: 432)
Name: NF19045_high_8
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 2177023 - 2176588
Alignment:
| Q |
1 |
ctaacaagaaagggagttaggaaaagtgttcgttttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaatt |
100 |
Q |
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| T |
2177023 |
ctaacaagaaaggcagttaggaaaagtgttcggtttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaatt |
2176924 |
T |
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| Q |
101 |
atattgatgaattattaggagaaagagaaaggatgaatgttactagagtgaaggtgaagatgacaaaggaagaagcagctaagttactgtcaaaatttaa |
200 |
Q |
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| T |
2176923 |
atattgatgaattattaggagaaagagaaaggatgaatgttactagagtgaaggtaaagatgacaaaggaagaagcagctaagttactgtcaaaatttaa |
2176824 |
T |
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| Q |
201 |
atgcaaagaa---ggagttcttccattcaaggatgttgcttctgagcttatagcactcccaatggaccgagttaccattctgtcaacttgaaccaacata |
297 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176823 |
atgcaaagaaggaggagttcttccattcaaggatgttgcttctgaacttatagcactcccaatggaccgagttaccattctgtcaacttgaaccaacata |
2176724 |
T |
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| Q |
298 |
tagcctctctagaatgaaatataagaaaaaatattcaaaaagtcaaatgtatttggttcgagacaccgtagaacacggtatgcagtgttagtgtgtttct |
397 |
Q |
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| T |
2176723 |
taacctctctagaatgaaatataagaaaaaatattcaaaaagtcaaatgtatttggttcgagacaccgtagaacacggtatccagtgttagtgtgtttcc |
2176624 |
T |
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| Q |
398 |
gtgtgagtc-ttgggagttccaaaagtacttggact |
432 |
Q |
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| T |
2176623 |
ttgtgagtctttgggagtcccaaaagtacttggact |
2176588 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 352
Target Start/End: Original strand, 31846124 - 31846152
Alignment:
| Q |
324 |
aaaaatattcaaaaagtcaaatgtatttg |
352 |
Q |
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| T |
31846124 |
aaaaatattcaaaaagtcaaatgtatttg |
31846152 |
T |
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