View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_1 (Length: 640)
Name: NF19045_low_1
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 138 - 634
Target Start/End: Complemental strand, 47038522 - 47038026
Alignment:
| Q |
138 |
catacagaggaataaggaagagaaagtggggtaagtgggtagcagaaataagagaaccaaataaaagatcaagaatatggttaggttcttacatcactcc |
237 |
Q |
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| T |
47038522 |
catacagaggaataaggaagagaaagtggggtaagtgggtagcagaaataagagaaccaaataaaagatcaagaatatggttaggttcttacatcactcc |
47038423 |
T |
|
| Q |
238 |
ggtagctgctgctcgtgcctacgacaccgccgtattctatttaagaggtcctacggctcgtcttaatttccccgaattattgctcgaagacgacgaagaa |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47038422 |
ggtagctgctgctcgtgcctacgacaccgccgtattctatttaagaggtcctacggctcgtcttaatttccccgaattattgctcgaagacgacgaagaa |
47038323 |
T |
|
| Q |
338 |
aacaacgacggttctattcagcaaggtaacatgtctgctgatttaatacgcaaaaaagctaccaaagtcggtgctagagttgatgctcttcaagcggctc |
437 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47038322 |
aacaaggacggttctattcagcaaggtaacatgtctgctgatttaatacgcaaaaaagctaccaaagtcggtgctagagttgatgctcttcaagcggctc |
47038223 |
T |
|
| Q |
438 |
ttgaagcttcttctcgttctgattccgatcaattcaacgctgatgtgaaacctgatttgaacaagtttccagaacctgaagattattaatgctttttcac |
537 |
Q |
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| T |
47038222 |
ttcaagcttcttctcgttctgattccgatcaattcaacgctgatgtgaaacctgatttgaacaagtttccagaacctgaagattattaatgctttttcac |
47038123 |
T |
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| Q |
538 |
ttagaggtttaatattattgatatgatacttagtttctctctgtaatctttaatatccatcatctattaatcaacccaatattttgttatgatgatg |
634 |
Q |
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| T |
47038122 |
ttagaggtttaatattattgatatgatacttagtttctctctgtaatctttaatatccatcatctattaatcaacccaatattttgttatgatgatg |
47038026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 47038641 - 47038595
Alignment:
| Q |
19 |
aagcgaatcaactaggaggatcatggaagaagaaagagattgttgtt |
65 |
Q |
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| T |
47038641 |
aagcgaatcaactaggaggatcatggaagaagaaagagattgttgtt |
47038595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 5681485 - 5681578
Alignment:
| Q |
138 |
catacagaggaataaggaagagaaagtggggtaagtgggtagcagaaataagagaaccaaataaaagatcaagaatatggttaggttcttacat |
231 |
Q |
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| T |
5681485 |
catatagaggaataaggatgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacat |
5681578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 24174043 - 24174098
Alignment:
| Q |
173 |
tgggtagcagaaataagagaaccaaataaaagatcaagaatatggttaggttctta |
228 |
Q |
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| T |
24174043 |
tgggtatcagaaataagagcaccaaatcaaaaaacaagaatatggttaggttctta |
24174098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 6026845 - 6026885
Alignment:
| Q |
392 |
aaagctaccaaagtcggtgctagagttgatgctcttcaagc |
432 |
Q |
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|||||||| |||| |||||||||||||||||||||||||| |
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| T |
6026845 |
aaagctactgaagttggtgctagagttgatgctcttcaagc |
6026885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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