View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_12 (Length: 411)
Name: NF19045_low_12
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 47492988 - 47493372
Alignment:
| Q |
11 |
cagagaccaaattaggttaacacttcaatttctaagactaaattggcggcgattccttcggattttagcagcgttctggattagcatacagctttcattt |
110 |
Q |
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| T |
47492988 |
cagagaccaaattaggttaacacttcaatttctaagactaaattggcggcgattccttcggattttagcagctttctggattagcatacagctttcattt |
47493087 |
T |
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| Q |
111 |
acctgctgatttgggcactccaagtctctaactactactatatgtatcccaaaacctgaatttgtattcttgtttcctccatttcctagctgtaaaacca |
210 |
Q |
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| T |
47493088 |
acctgctgatttgggcactccaagtctctaactactactatatgtatcccaaaacctgaatttgtattcttgtttcctccatttcctagctgtaaaacca |
47493187 |
T |
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| Q |
211 |
ataaatccaattacaaaacaattttttgtctagtaacaatcaatacttatctgttgtaagttttcccccctctctctcttggtgatatgatactattgca |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47493188 |
ataaatccaattccaaaacaattttttgtctagtaacaatcaatacttatctgttgtaagttttcccccctctctctcttggtgatatgatactattgca |
47493287 |
T |
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| Q |
311 |
aaaagtaacaaagaaagacaacacataatcttcacataaaattgttaaaacttcaaaaagttcatattttgggattttcttgatg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47493288 |
aaaagtaacaaagaaagacaacacataatcttcacataaaattgttaaaacttcaaaaagttcaaattttgggattttcttgatg |
47493372 |
T |
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