View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_low_16 (Length: 376)

Name: NF19045_low_16
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_low_16
NF19045_low_16
[»] chr4 (4 HSPs)
chr4 (13-356)||(26227350-26227693)
chr4 (13-356)||(33546916-33547259)
chr4 (195-360)||(4258079-4258244)
chr4 (125-185)||(11236327-11236387)
[»] scaffold0014 (1 HSPs)
scaffold0014 (6-356)||(129571-129921)
[»] chr2 (2 HSPs)
chr2 (6-356)||(23965606-23965955)
chr2 (148-216)||(25807149-25807217)
[»] chr6 (2 HSPs)
chr6 (142-345)||(22322264-22322467)
chr6 (195-360)||(20534612-20534777)
[»] chr3 (2 HSPs)
chr3 (195-360)||(21901049-21901214)
chr3 (142-345)||(1370711-1370914)
[»] scaffold0231 (1 HSPs)
scaffold0231 (142-216)||(9278-9352)
[»] chr5 (1 HSPs)
chr5 (88-260)||(149314-149486)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 26227350 - 26227693
Alignment:
Q  13 gagaaagaatacttcagctctgattccatagacaggtcagaagttaacgaccaacgccggtcttttcagttattcactccagaattcttaagtacattaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  26227350 gagaaagaatacttcagctctgattccatagacaggtcagaagttaacgaccaatgccagtcttttcagttattcactccagaattcttaagtacattaa 26227449  T
Q  113 gaacttcaggacttccaaaccataaaattaaactgaaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgcaatggtac 212  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||    
T  26227450 gaacttcaggacttccaaaccataaaattaaactaaaagttggaactcctataatgctattgagaaatttagatcaagtagagggattatgcaacggtac 26227549  T
Q  213 tcgactaattgttactaggatggctaatcatgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaatgtccatg 312  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26227550 tcgactaattgttactaggatggctaatcatgtgattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaatgtccatg 26227649  T
Q  313 tcaccttctcaatctccctggccttttaaacttatcagaagaca 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26227650 tcaccttctcaatctccctggccttttaaacttatcagaagaca 26227693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 33546916 - 33547259
Alignment:
Q  13 gagaaagaatacttcagctctgattccatagacaggtcagaagttaacgaccaacgccggtcttttcagttattcactccagaattcttaagtacattaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  33546916 gagaaagaatacttcagctctgattccatagacaggtcagaagttaacgatcaatgccagtcttttcagttattcactccagaattcttaagtacattaa 33547015  T
Q  113 gaacttcaggacttccaaaccataaaattaaactgaaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgcaatggtac 212  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||    
T  33547016 gaacttcaggacttccaaaccataaaattaaactaaaagttggaactcctataatgctattgagaaatttagatcaagtagagggattatgcaacggtac 33547115  T
Q  213 tcgactaattgttactaggatggctaatcatgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaatgtccatg 312  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33547116 tcgactaattgttactaggatggctaatcatgtgattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaatgtccatg 33547215  T
Q  313 tcaccttctcaatctccctggccttttaaacttatcagaagaca 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33547216 tcaccttctcaatctccctggccttttaaacttatcagaagaca 33547259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 360
Target Start/End: Complemental strand, 4258244 - 4258079
Alignment:
Q  195 gggattatgcaatggtactcgactaattgttactaggatggctaatcatgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatat 294  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||| || |||||  ||||||| || ||||| ||||||| |||| | || | | | || ||     
T  4258244 gggattatgcaatggtactagacttattattactagaatggccaaccatgttcttgaagcgaaaatcatgtcaggtacaaatataggaagcatgacttac 4258145  T
Q  295 ataccaagaatgtccatgtcaccttctcaatctccctggccttttaaacttatcagaagacaattt 360  Q
    || |||||||||   ||||| ||||| ||||| || ||||| ||||| |||| |||||||||||||    
T  4258144 attccaagaatggatatgtctccttcccaatccccatggccatttaagcttaccagaagacaattt 4258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 11236327 - 11236387
Alignment:
Q  125 ttccaaaccataaaattaaactgaaagttgggactcctataatgttattaagaaatttaga 185  Q
    ||||||||||||||||||| |||||||||||    ||||| ||||| ||||| ||||||||    
T  11236327 ttccaaaccataaaattaagctgaaagttggagtccctatcatgttgttaaggaatttaga 11236387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 129571 - 129921
Alignment:
Q  6 aggagcagagaaagaatacttcagctctgattccatagacaggtcagaagttaacgaccaacgccggtcttttcagttattcactccagaattcttaagt 105  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  129571 aggagaagagaaagagtacttcagctctgattccatagacaggtcagaagttaacgaccaatgccagtcttttcagttattcactctagaattcttaagt 129670  T
Q  106 acattaagaacttcaggacttccaaaccataaaattaaactgaaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgca 205  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  129671 aaattaagaacttcaggacttccaaaccataaaattaaactaaaagttagaactcctataatgctattaagaaatttagatcaagtagagggattatgca 129770  T
Q  206 atggtactcgactaattgttactaggatggctaatcatgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaat 305  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  129771 acggtactcgactaattgttactaggatggctaatcatgtgattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaat 129870  T
Q  306 gtccatgtcaccttctcaatctccctggccttttaaacttatcagaagaca 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  129871 gtccatgtcaccttctcaatctccctggccttttaaacttatcagaagaca 129921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 23965955 - 23965606
Alignment:
Q  6 aggagcagagaaagaatacttcagctctgattccatagacaggtcagaagttaacgaccaacgccggtcttttcagttattcactccagaattcttaagt 105  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||    
T  23965955 aggagaagagaaagaatacttcagctctgattccatagataggtca-aagttaacgatcaatgccagtcttttcagttattcactccagaattcttaagt 23965857  T
Q  106 acattaagaacttcaggacttccaaaccataaaattaaactgaaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23965856 acattaagaacttcaggacttccaaaccataaaattaaactgaaagttgggactcctataatgctattaagaaatttagatcaagtagagggattatgca 23965757  T
Q  206 atggtactcgactaattgttactaggatggctaatcatgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaat 305  Q
    | |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23965756 acggtacttgactaattgttactaggatggctaatcatgtgattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaat 23965657  T
Q  306 gtccatgtcaccttctcaatctccctggccttttaaacttatcagaagaca 356  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  23965656 gtccatgtcactttctcaatctccctggcctttttaacttatcagaagaca 23965606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 25807217 - 25807149
Alignment:
Q  148 aaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgcaatggtactcga 216  Q
    ||||||||||| || |||||||| ||||| |||||||||||||  || || || |||||||| ||||||    
T  25807217 aaagttgggacaccgataatgttgttaaggaatttagatcaagccgaaggtttgtgcaatggaactcga 25807149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 345
Target Start/End: Original strand, 22322264 - 22322467
Alignment:
Q  142 aaactgaaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgcaatggtactcgactaattgttactaggatggctaatc 241  Q
    ||||| |||||||| || || |||||||| ||||||||||||||||||| ||| || ||||||||||| |||||| |||  || || ||| | |||||||    
T  22322264 aaactcaaagttggaacaccaataatgttgttaagaaatttagatcaagcagaaggcttatgcaatggaactcgattaacagtcacaaggcttgctaatc 22322363  T
Q  242 atgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaatgtccatgtcaccttctcaatctccctggccttttaa 341  Q
    |||| ||||| || ||||| ||  | || |||||| |||| |||     ||| || |||||||||||  | |||||||| ||||| || ||||| |||||    
T  22322364 atgttattgaggccaagattataactggaaaaaatattggaaacaaggtatacattccaagaatgtcattatcaccttcacaatcaccgtggccatttaa 22322463  T
Q  342 actt 345  Q
    ||||    
T  22322464 actt 22322467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 360
Target Start/End: Complemental strand, 20534777 - 20534612
Alignment:
Q  195 gggattatgcaatggtactcgactaattgttactaggatggctaatcatgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatat 294  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||| || |||||  ||||||| || ||||| ||||||| |||| | || | | | || ||     
T  20534777 gggattatgcaatggtactagacttattattactagaatggccaaccatgttcttgaagcgaaaatcatgtcaggtacaaatataggaagcatgacttac 20534678  T
Q  295 ataccaagaatgtccatgtcaccttctcaatctccctggccttttaaacttatcagaagacaattt 360  Q
    || |||||||||   ||||| ||||| ||||| || ||||| ||||| |||| |||||||||||||    
T  20534677 attccaagaatggatatgtctccttcccaatccccatggccatttaagcttaccagaagacaattt 20534612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 360
Target Start/End: Complemental strand, 21901214 - 21901049
Alignment:
Q  195 gggattatgcaatggtactcgactaattgttactaggatggctaatcatgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatat 294  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||| || |||||  ||||||| || ||||| ||||||| |||| | || | | | || ||     
T  21901214 gggattatgcaatggtactagacttattattactagaatggccaaccatgttcttgaagcgaaaatcatgtcaggtacaaatataggaagcatgacttac 21901115  T
Q  295 ataccaagaatgtccatgtcaccttctcaatctccctggccttttaaacttatcagaagacaattt 360  Q
    || |||||||||   ||||| ||||| ||||| || ||||| ||||| |||| |||||||||||||    
T  21901114 attccaagaatggatatgtctccttcccaatccccatggccatttaagcttaccagaagacaattt 21901049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 345
Target Start/End: Complemental strand, 1370914 - 1370711
Alignment:
Q  142 aaactgaaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgcaatggtactcgactaattgttactaggatggctaatc 241  Q
    ||||| ||||||||||| || |||||||||||||| ||| |||||||||  || || || || ||||| |||||| |||| || || ||| | || ||||    
T  1370914 aaactcaaagttgggacaccaataatgttattaaggaatatagatcaagctgaaggtttgtgtaatggaactcgattaatagtcacaaggcttgcaaatc 1370815  T
Q  242 atgtaattgaagctaagatcatttcaggtaaaaatgttggcaacctaacatatataccaagaatgtccatgtcaccttctcaatctccctggccttttaa 341  Q
    |||| |||||||| || || ||  | || |||||| |||| || |    |||||| || |||||||| |||||||||||  |||| |||||||| || ||    
T  1370814 atgtcattgaagcaaaaattataactggaaaaaatattggaaatcgggtatatattccgagaatgtcaatgtcaccttcagaatcgccctggccgttcaa 1370715  T
Q  342 actt 345  Q
    ||||    
T  1370714 actt 1370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 9278 - 9352
Alignment:
Q  142 aaactgaaagttgggactcctataatgttattaagaaatttagatcaagtagagggattatgcaatggtactcga 216  Q
    ||||| |||||||| || || |||||||||||||| ||||||||||||| ||| || ||||||||||| ||||||    
T  9278 aaactcaaagttggaacaccaataatgttattaaggaatttagatcaagcagatggcttatgcaatggaactcga 9352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 260
Target Start/End: Complemental strand, 149486 - 149314
Alignment:
Q  88 actccagaattcttaagtacattaagaacttcaggacttccaaaccataaaattaaactgaaagttgggactcctataatgttattaagaaatttagatc 187  Q
    |||||||||||  ||||  ||||| | ||||||||||||||||| ||| |||| ||| | ||||||||  |||| |||||| | || || ||||| ||||    
T  149486 actccagaatttctaagctcattacgcacttcaggacttccaaatcatcaaatcaaattaaaagttggagctccaataatgcttttgaggaatttggatc 149387  T
Q  188 aagtagagggattatgcaatggtactcgactaattgttactaggatggctaatcatgtaattgaagctaagat 260  Q
    ||   || || || || ||||||||| || | |||||||| | | |||| | ||||||||| ||||| |||||    
T  149386 aaactgaagggttgtgtaatggtactagaatgattgttacaaagctggcaactcatgtaatagaagcaaagat 149314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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