View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_18 (Length: 358)
Name: NF19045_low_18
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 29933153 - 29932822
Alignment:
| Q |
17 |
aggattgaacgaccttctggacttggctgattatgctgtatgctcagaaaagtttcctcaggcaagttacccaaatcatagtactaacatgaagtagaat |
116 |
Q |
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| T |
29933153 |
aggattgaacgaccttctggacttggctgattatgctgtatgctcagaaaagtttcctcaggcaagttacccaaatcatagtactaacatgaagtagaat |
29933054 |
T |
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| Q |
117 |
tactagatatgtaaaacaagaacattagttaattttgggagaatttctgaagtaattctttctgacacatttcacagacatggacagaggcatcatctat |
216 |
Q |
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| T |
29933053 |
tactagatatgtaaaacaagaacattagttaattttgggagaatttctgaagtaattctttctgacacatttcacagacatggacagaggcatcatctat |
29932954 |
T |
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| Q |
217 |
accaagagcactagtttcaattcttttaagacttccaagacttaaatttgtgattgcaactttgggaaaagacggctgcataatgcttcagaaatgcgca |
316 |
Q |
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| T |
29932953 |
accaagagcactagtttcaattcttttaagacttccaagacttaaatttgtgattgcaactttgggaaaagacggctgcataatgcttcagaaatgcgca |
29932854 |
T |
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| Q |
317 |
gatggtaaatatacctctttgccacccctttg |
348 |
Q |
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| T |
29932853 |
gatggtaaatatacctctttgaaacccctttg |
29932822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 39794897 - 39794941
Alignment:
| Q |
260 |
aaatttgtgattgcaactttgggaaaagacggctgcataatgctt |
304 |
Q |
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| T |
39794897 |
aaatttgtgattgtaactttgggaaaagatggttgcataatgctt |
39794941 |
T |
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