View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_2 (Length: 639)
Name: NF19045_low_2
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 15591505 - 15591826
Alignment:
| Q |
19 |
actaggggtatatgaaacacaataaaaagaaataagaacagggtcgattctgccttccgttgcatccaaattttcctcttctctatttcctacaattatt |
118 |
Q |
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| T |
15591505 |
actaggggtatatgaattacaataaaaagaaataagaacagggtcgattctgccttccgttgcatccaaattttcctcttctctatttcctacaattatt |
15591604 |
T |
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| Q |
119 |
cactgtttattatctcaataaactacattgattttgaaattgcataaatagtattaaattatatttgatcaactattgttagtgtataggttaacaagtt |
218 |
Q |
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| T |
15591605 |
cactgtttattatctcaataaactacattgattttgaaattgcataaatagtattaaattatatttgatcaactattgttagtgtataggttaacaagtt |
15591704 |
T |
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| Q |
219 |
agtttgacggattgtgagttggttaacctaactcactctataaataagtctcttatca-tatatcatgactcattctttggtcgatctatatttatttca |
317 |
Q |
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| T |
15591705 |
agtttgacggattgtgagttggttaacctaactcactctataaataagtctcttatcattatatcatgactcattctttggtcgatctatatttattcca |
15591804 |
T |
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| Q |
318 |
tattaatttcaagaagtactct |
339 |
Q |
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| T |
15591805 |
tattaatctcaagaagtactct |
15591826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 417 - 491
Target Start/End: Original strand, 15591865 - 15591939
Alignment:
| Q |
417 |
attgaaccacaaagattggcaagacaaaatagaaataaccaagtttctgcatacgataaacagtgatttgcaaga |
491 |
Q |
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| T |
15591865 |
attgaaccacaaagattggcaagacaaaatagaaataaccaagtttctgcatactatgaacagtgattcgcaaga |
15591939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 554 - 624
Target Start/End: Original strand, 15592005 - 15592075
Alignment:
| Q |
554 |
taaccaccaacgtcaaagtcaaagcataacctctttacaagagcataaaccaaaactaagccaaactcttc |
624 |
Q |
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| T |
15592005 |
taaccaccaacatcaaaatcaaaacataacctctttacaagagcataaaccaaaactaagccaaattcttc |
15592075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 15612258 - 15612337
Alignment:
| Q |
90 |
tttcctcttctctatttcctacaattattcactgtttattatctcaataaactacattgattttgaaatt-gcataaata |
168 |
Q |
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| T |
15612258 |
tttcctcttctctatttcctacaattgttcaccgtatattatcttaagaaactacattgattttaaaattggcataaata |
15612337 |
T |
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