View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_low_22 (Length: 338)

Name: NF19045_low_22
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_low_22
NF19045_low_22
[»] chr6 (12 HSPs)
chr6 (10-199)||(30036313-30036510)
chr6 (10-199)||(30152049-30152246)
chr6 (216-324)||(30036614-30036722)
chr6 (216-324)||(30152350-30152458)
chr6 (286-324)||(2075341-2075379)
chr6 (282-324)||(3610847-3610889)
chr6 (283-324)||(5327478-5327519)
chr6 (288-324)||(14986636-14986672)
chr6 (288-324)||(22341067-22341103)
chr6 (288-324)||(34504163-34504199)
chr6 (283-324)||(2777204-2777245)
chr6 (279-324)||(11547412-11547457)
[»] chr5 (11 HSPs)
chr5 (283-324)||(42267488-42267529)
chr5 (287-324)||(2224934-2224971)
chr5 (287-324)||(17402813-17402850)
chr5 (288-324)||(8267712-8267748)
chr5 (288-324)||(23126233-23126269)
chr5 (288-324)||(35098897-35098933)
chr5 (283-324)||(16437451-16437492)
chr5 (279-324)||(39088752-39088797)
chr5 (288-324)||(4430828-4430864)
chr5 (284-324)||(5042391-5042431)
chr5 (288-324)||(21064118-21064154)
[»] scaffold0110 (2 HSPs)
scaffold0110 (94-180)||(41282-41370)
scaffold0110 (10-58)||(41410-41458)
[»] chr2 (13 HSPs)
chr2 (281-324)||(31389690-31389733)
chr2 (283-324)||(670359-670400)
chr2 (283-324)||(29684547-29684588)
chr2 (288-324)||(6941082-6941118)
chr2 (289-324)||(17779525-17779560)
chr2 (284-322)||(14233606-14233644)
chr2 (283-324)||(29051542-29051583)
chr2 (282-323)||(41586554-41586595)
chr2 (283-324)||(42223839-42223880)
chr2 (288-324)||(2464142-2464178)
chr2 (288-324)||(18177083-18177119)
chr2 (288-324)||(28679459-28679495)
chr2 (292-324)||(41569292-41569324)
[»] chr4 (22 HSPs)
chr4 (279-324)||(41486026-41486071)
chr4 (283-324)||(51194412-51194453)
chr4 (283-324)||(54669471-54669512)
chr4 (284-324)||(33899214-33899254)
chr4 (282-324)||(37066130-37066172)
chr4 (283-324)||(624198-624239)
chr4 (283-324)||(5932045-5932086)
chr4 (283-324)||(9118751-9118792)
chr4 (283-324)||(47965880-47965921)
chr4 (288-324)||(14451536-14451572)
chr4 (288-324)||(41082460-41082496)
chr4 (288-324)||(53152213-53152249)
chr4 (281-324)||(12112770-12112813)
chr4 (289-324)||(23822141-23822176)
chr4 (283-324)||(2256218-2256259)
chr4 (283-324)||(31076196-31076237)
chr4 (288-324)||(17476019-17476055)
chr4 (288-324)||(25317958-25317994)
chr4 (288-324)||(26206869-26206905)
chr4 (288-324)||(30079989-30080025)
chr4 (284-324)||(41389761-41389801)
chr4 (292-324)||(50272969-50273001)
[»] chr8 (15 HSPs)
chr8 (283-323)||(41521112-41521152)
chr8 (283-324)||(1633777-1633818)
chr8 (283-324)||(30135901-30135942)
chr8 (283-324)||(32843829-32843870)
chr8 (283-324)||(36110281-36110322)
chr8 (288-324)||(1871507-1871543)
chr8 (288-324)||(7586055-7586091)
chr8 (290-324)||(11657895-11657929)
chr8 (283-324)||(13971263-13971304)
chr8 (283-324)||(16966928-16966969)
chr8 (283-323)||(28646816-28646857)
chr8 (283-323)||(28651400-28651441)
chr8 (283-324)||(34591407-34591448)
chr8 (288-324)||(7955899-7955935)
chr8 (288-324)||(37783863-37783899)
[»] chr3 (18 HSPs)
chr3 (288-324)||(37508390-37508426)
chr3 (290-324)||(39020052-39020086)
chr3 (283-324)||(10206860-10206901)
chr3 (283-324)||(36121964-36122005)
chr3 (283-324)||(39670984-39671025)
chr3 (288-324)||(44677376-44677412)
chr3 (280-324)||(49167893-49167937)
chr3 (288-324)||(54195483-54195519)
chr3 (290-324)||(390952-390986)
chr3 (290-324)||(13934497-13934531)
chr3 (288-322)||(28419106-28419140)
chr3 (283-324)||(30862960-30863001)
chr3 (283-324)||(33376008-33376049)
chr3 (283-324)||(35201427-35201468)
chr3 (281-321)||(37927089-37927130)
chr3 (283-324)||(49417717-49417758)
chr3 (283-324)||(55013145-55013186)
chr3 (288-324)||(32767819-32767855)
[»] chr1 (20 HSPs)
chr1 (288-324)||(3603254-3603290)
chr1 (288-324)||(26585771-26585807)
chr1 (281-324)||(26837595-26837638)
chr1 (285-324)||(36494594-36494633)
chr1 (284-324)||(756999-757039)
chr1 (288-324)||(1852843-1852879)
chr1 (288-324)||(20565010-20565046)
chr1 (289-324)||(8411611-8411646)
chr1 (289-324)||(44632670-44632705)
chr1 (289-324)||(51191931-51191966)
chr1 (283-324)||(902781-902822)
chr1 (283-324)||(3024637-3024678)
chr1 (283-324)||(7128261-7128302)
chr1 (283-324)||(9008368-9008409)
chr1 (283-324)||(21340664-21340705)
chr1 (283-324)||(51286255-51286296)
chr1 (287-319)||(32319213-32319245)
chr1 (288-324)||(33024463-33024499)
chr1 (288-324)||(38303580-38303616)
chr1 (281-313)||(52267357-52267389)
[»] scaffold0471 (1 HSPs)
scaffold0471 (283-324)||(150-191)
[»] chr7 (14 HSPs)
chr7 (283-324)||(19785966-19786007)
chr7 (279-324)||(23048283-23048328)
chr7 (283-324)||(32815311-32815352)
chr7 (288-324)||(29162868-29162904)
chr7 (288-324)||(39137295-39137331)
chr7 (283-319)||(39332121-39332157)
chr7 (284-324)||(41402651-41402691)
chr7 (293-324)||(46148134-46148165)
chr7 (283-324)||(21023004-21023045)
chr7 (287-324)||(29002749-29002786)
chr7 (279-324)||(37808647-37808692)
chr7 (288-324)||(3040239-3040275)
chr7 (288-324)||(13163062-13163098)
chr7 (288-324)||(39231620-39231656)
[»] scaffold0449 (1 HSPs)
scaffold0449 (288-324)||(9346-9382)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 30036313 - 30036510
Alignment:
Q  10 gcacagagaaataacctgaattaaactgaatccaattggtgttcttaatcatnnnnnnnnnnnnnggcttctgattttggattgaat------------t 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||             ||||||||||||||||||||||            |    
T  30036313 gcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataaaaaaaaa----ggcttctgattttggattgaatttgtcttagaatt 30036408  T
Q  98 tgtgttgtcagatggtcacaattccaaataccattttggaaaagattttaagcatgggttggaattcacaggctgtgaacatagagggattaaatgaatc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30036409 tgtgttgtcagatggtcacaattccaaataccattttggaaaagattttaagcatgggttggaattcacaggctgtgaacatagagggattaaatgaatc 30036508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 30152049 - 30152246
Alignment:
Q  10 gcacagagaaataacctgaattaaactgaatccaattggtgttcttaatcatnnnnnnnnnnnnnggcttctgattttggattgaat------------t 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||             ||||||||||||||||||||||            |    
T  30152049 gcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataaaaaaaaa----ggcttctgattttggattgaatttgtcttagaatt 30152144  T
Q  98 tgtgttgtcagatggtcacaattccaaataccattttggaaaagattttaagcatgggttggaattcacaggctgtgaacatagagggattaaatgaatc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30152145 tgtgttgtcagatggtcacaattccaaataccattttggaaaagattttaagcatgggttggaattcacaggctgtgaacatagagggattaaatgaatc 30152244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 30036614 - 30036722
Alignment:
Q  216 tattattttagttagtaaacgtggaaagatggacatgttttttctcgtcttgacgctagtatcatttagagaagtgttatttgaacaaccaatttgatga 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||    
T  30036614 tattattttagttagtaaacgtggaaagatggacatgttttttctcgtcttgacgctagtattatttagagaagtgttatttgaacaatcaatttggtga 30036713  T
Q  316 caacttatt 324  Q
    |||||||||    
T  30036714 caacttatt 30036722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 30152350 - 30152458
Alignment:
Q  216 tattattttagttagtaaacgtggaaagatggacatgttttttctcgtcttgacgctagtatcatttagagaagtgttatttgaacaaccaatttgatga 315  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  30152350 tattattttagtttgtaaacgtggaaagatggacatgttttttctcatcttgacgctagtatcatttagagaagtgttatttgaacaatcaatttggtga 30152449  T
Q  316 caacttatt 324  Q
     ||||||||    
T  30152450 taacttatt 30152458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 2075341 - 2075379
Alignment:
Q  286 gaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  2075341 gaagtgttatttgaacaaccaatttggtgacaacttatt 2075379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 3610847 - 3610889
Alignment:
Q  282 tagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||| |||||||||||||||||||||||| ||||||||||||    
T  3610847 tagaggagtgttatttgaacaaccaatttggtgacaacttatt 3610889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 5327478 - 5327519
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  5327478 agaggagtgttatttgaacaaccaatttggtgacaacttatt 5327519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 14986636 - 14986672
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14986636 agtgttatttgaacaaccaatttggtgacaacttatt 14986672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 22341067 - 22341103
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22341067 agtgttatttgaacaaccaatttggtgacaacttatt 22341103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 34504199 - 34504163
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34504199 agtgttatttgaacaaccaatttggtgacaacttatt 34504163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 2777204 - 2777245
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||    
T  2777204 agagaagtgttatttgaacaatcaatttggtgataacttatt 2777245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 11547412 - 11547457
Alignment:
Q  279 atttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||| |||||||||||||||| ||||||| |||||| |||||    
T  11547412 atttagaggagtgttatttgaacaatcaatttggtgacaatttatt 11547457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 42267529 - 42267488
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42267529 agagaagtgttatttgaacaaccaatttgatgacaacttatt 42267488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 2224971 - 2224934
Alignment:
Q  287 aagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2224971 aagtgttatttgaacaaccaatttgatgacaacttatt 2224934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 17402813 - 17402850
Alignment:
Q  287 aagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17402813 aagtgttatttgaacaaccaatttggtgacaacttatt 17402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 8267712 - 8267748
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8267712 agtgttatttgaacaaccaatttggtgacaacttatt 8267748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 23126233 - 23126269
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23126233 agtgttatttgaacaactaatttgatgacaacttatt 23126269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 35098897 - 35098933
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35098897 agtgttatttgaacaaccaatttggtgacaacttatt 35098933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 16437451 - 16437492
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| |||||| |||||    
T  16437451 agaggagtgttatttgaacaaccaatttggtgacaatttatt 16437492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 39088752 - 39088797
Alignment:
Q  279 atttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| ||| |||||||||||||||||||||||  ||||||||||||    
T  39088752 attttgagtagtgttatttgaacaaccaatttagtgacaacttatt 39088797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 4430828 - 4430864
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  4430828 agtgctatttgaacaaccaatttggtgacaacttatt 4430864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 5042431 - 5042391
Alignment:
Q  284 gagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||| ||||||| ||| ||||||||    
T  5042431 gagaagtgttatttgaacaatcaatttggtgataacttatt 5042391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 21064118 - 21064154
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  21064118 agtgttatttgaacaatcaatttggtgacaacttatt 21064154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 41370 - 41282
Alignment:
Q  94 aatttgtgttgtcagatggtcacaattccaaataccattttgg-aaaaga-ttttaagcatgggttggaattcacaggctgtgaacata 180  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||||| ||||| ||||| ||||| || |||| | ||||||||||    
T  41370 aatttgtgttgtcagatggttacaactccaaataccattttggaaaaagatttttatgcatgagttgggatgcacatgttgtgaacata 41282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 41458 - 41410
Alignment:
Q  10 gcacagagaaataacctgaattaaactgaatccaattggtgttcttaat 58  Q
    |||||||||||||||||||| | || ||||||||||||||||| |||||    
T  41458 gcacagagaaataacctgaagtgaagtgaatccaattggtgttgttaat 41410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 31389733 - 31389690
Alignment:
Q  281 ttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  31389733 ttagaggagtgttatttgaacaaccaatttgatgacaacttatt 31389690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 670359 - 670400
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  670359 agaggagtgttatttgaacaaccaatttgatgacaacttatt 670400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 29684547 - 29684588
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  29684547 agagaagtgttatttgaacaatcaatttgatgacaacttatt 29684588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 6941118 - 6941082
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||| ||||||||    
T  6941118 agtgttatttgaacaaccaatttgatgataacttatt 6941082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 17779560 - 17779525
Alignment:
Q  289 gtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17779560 gtgttatttgaacaaccaatttggtgacaacttatt 17779525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 14233606 - 14233644
Alignment:
Q  284 gagaagtgttatttgaacaaccaatttgatgacaactta 322  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  14233606 gagaagtgttatttgaacaaccattttgttgacaactta 14233644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 29051542 - 29051583
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||| ||||||||    
T  29051542 agaggagtgttatttgaacaaccaatttggtgataacttatt 29051583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 41586554 - 41586595
Alignment:
Q  282 tagagaagtgttatttgaacaaccaatttgatgacaacttat 323  Q
    ||||||||||||||||||||||||| || | |||||||||||    
T  41586554 tagagaagtgttatttgaacaaccatttagttgacaacttat 41586595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 42223839 - 42223880
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||||||| ||| || |||||    
T  42223839 agagaagtgttatttgaacaaccaatttggtgataatttatt 42223880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 2464142 - 2464178
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  2464142 agtgttatttaaacaaccaatttgatgaaaacttatt 2464178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 18177119 - 18177083
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  18177119 agtgttatttgaacaatcaatttggtgacaacttatt 18177083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 28679495 - 28679459
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| | ||||||||||    
T  28679495 agtgttatttgaacaaccaatttggtcacaacttatt 28679459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 41569292 - 41569324
Alignment:
Q  292 ttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||    
T  41569292 ttatttgaacaaccaatttgatgataacttatt 41569324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 41486026 - 41486071
Alignment:
Q  279 atttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||    
T  41486026 atttagaggagtgttatttgaacaaccaatttggtgacaacttatt 41486071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 51194453 - 51194412
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  51194453 agaggagtgttatttgaacaaccaatttgatgacaacttatt 51194412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 54669471 - 54669512
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  54669471 agaggagtgttatttgaacaaccaatttgatgacaacttatt 54669512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 33899214 - 33899254
Alignment:
Q  284 gagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  33899214 gagaagtgttatttgaacaaccaatttggtgacaacttatt 33899254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 37066172 - 37066130
Alignment:
Q  282 tagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||| |||||||||||||||||||||||| ||||||||||||    
T  37066172 tagaggagtgttatttgaacaaccaatttggtgacaacttatt 37066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 624198 - 624239
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  624198 agagaagtgttatttgaacaactaatttggtgacaacttatt 624239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 5932045 - 5932086
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  5932045 agaggagtgttatttgaacaaccaatttggtgacaacttatt 5932086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 9118751 - 9118792
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  9118751 agaggagtgttatttgaacaaccaatttggtgacaacttatt 9118792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 47965921 - 47965880
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  47965921 agaggagtgttatttgaacaaccaatttggtgacaacttatt 47965880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 14451572 - 14451536
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14451572 agtgttatttgaacaaccaatttggtgacaacttatt 14451536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 41082496 - 41082460
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||||| |||||||||    
T  41082496 agtgttatttgaacaaccaatttgatggcaacttatt 41082460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 53152213 - 53152249
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  53152213 agtgttatttgaacaaccaatttggtgacaacttatt 53152249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 12112813 - 12112770
Alignment:
Q  281 ttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||    
T  12112813 ttagaggagtgatatttgaacaaccaatttggtgacaacttatt 12112770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 23822141 - 23822176
Alignment:
Q  289 gtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23822141 gtgttatttgaacaaccaatttggtgacaacttatt 23822176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 2256218 - 2256259
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| ||||||||||||||||| |||||| ||||||||||||    
T  2256218 agaggagtgttatttgaacaactaatttggtgacaacttatt 2256259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 31076237 - 31076196
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  31076237 agagtagtgttatttaaacaaccaatttggtgacaacttatt 31076196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 17476055 - 17476019
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  17476055 agtgttatttgaacaatcaatttggtgacaacttatt 17476019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 25317958 - 25317994
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  25317958 agtgttatttgaacaaccaatttggtgataacttatt 25317994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 26206869 - 26206905
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  26206869 agtgttatttgaacaactaatttggtgacaacttatt 26206905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 30080025 - 30079989
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  30080025 agtgttatttgaacaaccaatttggtgaaaacttatt 30079989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 41389761 - 41389801
Alignment:
Q  284 gagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  41389761 gagaagtgttatttgaacaaccaatttcgtgactacttatt 41389801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 50272969 - 50273001
Alignment:
Q  292 ttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||| ||||||||||||    
T  50272969 ttatttgaacaaccaatttggtgacaacttatt 50273001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 41521152 - 41521112
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttat 323  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  41521152 agagaagtgttatttgaacaaccaatttgatgataacttat 41521112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 1633777 - 1633818
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  1633777 agaggagtgttatttgaacaaccaatttggtgacaacttatt 1633818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 30135901 - 30135942
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  30135901 agaggagtgttatttgaacaaccaatttggtgacaacttatt 30135942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 32843829 - 32843870
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  32843829 agaggagtgttatttgaacaaccaatttggtgacaacttatt 32843870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 36110322 - 36110281
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  36110322 agaggagtgttatttgaacaaccaatttggtgacaacttatt 36110281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 1871507 - 1871543
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1871507 agtgttatttgaacaaccaatttgattacaacttatt 1871543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 7586055 - 7586091
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7586055 agtgttatttgaacaaccaatttcatgacaacttatt 7586091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 11657895 - 11657929
Alignment:
Q  290 tgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  11657895 tgttatttgaacaaccaatttgctgacaacttatt 11657929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 13971304 - 13971263
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| | ||||||||||    
T  13971304 agaggagtgttatttgaacaaccaatttggtaacaacttatt 13971263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 16966969 - 16966928
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||| ||||||||    
T  16966969 agaggagtgttatttgaacaaccaatttggtgaaaacttatt 16966928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 28646857 - 28646816
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttga-tgacaacttat 323  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  28646857 agaggagtgttatttgaacaaccaatttgattgacaacttat 28646816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 28651441 - 28651400
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttga-tgacaacttat 323  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  28651441 agaggagtgttatttgaacaaccaatttgattgacaacttat 28651400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 34591448 - 34591407
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  34591448 agaggagtgttatttgaacaatcaatttggtgacaacttatt 34591407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 7955899 - 7955935
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  7955899 agtgttatttgaacaatcaatttggtgacaacttatt 7955935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 37783863 - 37783899
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  37783863 agtgttatttgatcaaccaatttggtgacaacttatt 37783899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 37508390 - 37508426
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  37508390 agtgttatttgaacaaccaatttgatgacaacttatt 37508426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 39020052 - 39020086
Alignment:
Q  290 tgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||||||||||    
T  39020052 tgttatttgaacaaccaatttgatgacaacttatt 39020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 10206860 - 10206901
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  10206860 agaggagtgttatttgaacaaccaatttggtgacaacttatt 10206901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 36122005 - 36121964
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  36122005 agaggagtgttatttgaacaaccaatttggtgacaacttatt 36121964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 39670984 - 39671025
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  39670984 agaggagtgttatttgaacaaccaatttggtgacaacttatt 39671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 44677376 - 44677412
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44677376 agtgttatttgaacaaccaatttggtgacaacttatt 44677412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 49167937 - 49167893
Alignment:
Q  280 tttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||    
T  49167937 tttagaggaatgttatttgatcaaccaatttgatgacaacttatt 49167893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 54195519 - 54195483
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  54195519 agtgttatttgaacaaccaatttggtgacaacttatt 54195483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 390986 - 390952
Alignment:
Q  290 tgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||| ||||||||||||||||    
T  390986 tgttatttgaacaaccaagttgatgacaacttatt 390952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 13934497 - 13934531
Alignment:
Q  290 tgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||||||| |||||    
T  13934497 tgttatttgaacaaccaatttgatgacaatttatt 13934531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 322
Target Start/End: Original strand, 28419106 - 28419140
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaactta 322  Q
    |||||||||||||||||||||||| ||||||||||    
T  28419106 agtgttatttgaacaaccaatttggtgacaactta 28419140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 30862960 - 30863001
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||| ||||||| |||||| |||||    
T  30862960 agagaagtgttatttgaacaatcaatttggtgacaatttatt 30863001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 33376049 - 33376008
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  33376049 agaggagtgttatttgaacaatcaatttggtgacaacttatt 33376008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 35201427 - 35201468
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  35201427 agaggagtgttatttgaacaatcaatttggtgacaacttatt 35201468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 37927089 - 37927130
Alignment:
Q  281 ttagagaagtgttatttgaacaaccaatttga-tgacaactt 321  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  37927089 ttagaggagtgttatttgaacaaccaatttgattgacaactt 37927130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 49417758 - 49417717
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||  ||||||||||||    
T  49417758 agagtagtgttatttgaacaaccaattttgtgacaacttatt 49417717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 55013186 - 55013145
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| |||||| |||||    
T  55013186 agagcagtgttatttgaacaaccaatttggtgacaatttatt 55013145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 32767855 - 32767819
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  32767855 agtgttatttgaacaatcaatttggtgacaacttatt 32767819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 3603290 - 3603254
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  3603290 agtgttatttgaacaaccaatttgatgacaacttatt 3603254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 26585771 - 26585807
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  26585771 agtgttatttgaacaaccaatttgatgacaacttatt 26585807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 26837638 - 26837595
Alignment:
Q  281 ttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  26837638 ttagaggagtgttatttgaacaaccaatttggtgacaacttatt 26837595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 36494633 - 36494594
Alignment:
Q  285 agaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  36494633 agaagtgttatttgaacaaccaatttggtgacaacttatt 36494594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 757039 - 756999
Alignment:
Q  284 gagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  757039 gagaaatgttatttgaacaaccaatttggtgacaacttatt 756999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 1852843 - 1852879
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1852843 agtgttatttgaataaccaatttgatgacaacttatt 1852879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 20565010 - 20565046
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  20565010 agtgttatttgaacaaccaatttggtgacaacttatt 20565046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 8411611 - 8411646
Alignment:
Q  289 gtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8411611 gtgttatttgaacaaccaatttggtgacaacttatt 8411646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 44632705 - 44632670
Alignment:
Q  289 gtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||| |||||||    
T  44632705 gtgttatttgaacaaccaatttgatgacgacttatt 44632670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 51191966 - 51191931
Alignment:
Q  289 gtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51191966 gtgttatttgaacaaccaatttggtgacaacttatt 51191931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 902822 - 902781
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||||||| | ||||||    
T  902822 agaggagtgttatttgaacaaccaatttgatgatagcttatt 902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 3024637 - 3024678
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||| ||||||||||||||| |||||| ||||||||||||    
T  3024637 agagaaatgttatttgaacaactaatttggtgacaacttatt 3024678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 7128302 - 7128261
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  7128302 agaggagtgttatttgaacaatcaatttggtgacaacttatt 7128261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 9008409 - 9008368
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  9008409 agaggagtgttatttgaacaatcaatttggtgacaacttatt 9008368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 21340705 - 21340664
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  21340705 agaggagtgttatttgaacaatcaatttggtgacaacttatt 21340664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 51286255 - 51286296
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||  ||||||||||||    
T  51286255 agagtagtgttatttgaacaaccaattttgtgacaacttatt 51286296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 32319213 - 32319245
Alignment:
Q  287 aagtgttatttgaacaaccaatttgatgacaac 319  Q
    ||||||||||||||||| |||||||||||||||    
T  32319213 aagtgttatttgaacaatcaatttgatgacaac 32319245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 33024463 - 33024499
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  33024463 agtgttatttgaacaatcaatttggtgacaacttatt 33024499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 38303580 - 38303616
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  38303580 agtgttatttgaacaaccaatttggtgataacttatt 38303616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 52267389 - 52267357
Alignment:
Q  281 ttagagaagtgttatttgaacaaccaatttgat 313  Q
    |||||| ||||||||||||||||||||||||||    
T  52267389 ttagaggagtgttatttgaacaaccaatttgat 52267357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 191 - 150
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  191 agaggagtgttatttgaacaaccaatttggtgacaacttatt 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 19785966 - 19786007
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  19785966 agaggagtgttatttgaacaatcaatttgatgacaacttatt 19786007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 23048283 - 23048328
Alignment:
Q  279 atttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||    
T  23048283 attttgaggagtgttatttgaacaaccaatttggtgacaacttatt 23048328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 32815352 - 32815311
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  32815352 agaggagtgttatttgaacaaccaatttggtgacaacttatt 32815311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 29162868 - 29162904
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29162868 agtgttatttgaacaaccaatttggtgacaacttatt 29162904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 39137331 - 39137295
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39137331 agtgttatttgaacaaccaatttgatgataacttatt 39137295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 39332157 - 39332121
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaac 319  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39332157 agaggagtgttatttgaacaaccaatttgatgacaac 39332121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 41402691 - 41402651
Alignment:
Q  284 gagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  41402691 gagaagtgttatttgaacaactaatttggtgacaacttatt 41402651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 324
Target Start/End: Complemental strand, 46148165 - 46148134
Alignment:
Q  293 tatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||||||||||    
T  46148165 tatttgaacaaccaatttgatgacaacttatt 46148134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 21023004 - 21023045
Alignment:
Q  283 agagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| |||||||||||||||| |||||||||||||| |||||    
T  21023004 agaggagtgttatttgaacaatcaatttgatgacaatttatt 21023045  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 29002786 - 29002749
Alignment:
Q  287 aagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  29002786 aagtgttatttgaacaaccaatttggtgacagcttatt 29002749  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 37808647 - 37808692
Alignment:
Q  279 atttagagaagtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  37808647 atttggaggagtgttatttgaacaaccaatttggtgacaacgtatt 37808692  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 3040275 - 3040239
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  3040275 agtgttatttgaacaatcaatttgatgataacttatt 3040239  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 13163098 - 13163062
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  13163098 agtgttatttgaacaatcaatttggtgacaacttatt 13163062  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 39231620 - 39231656
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  39231620 agtgttatttgaacaactaatttggtgacaacttatt 39231656  T

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Target: scaffold0449 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 9382 - 9346
Alignment:
Q  288 agtgttatttgaacaaccaatttgatgacaacttatt 324  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9382 agtgttatttgaacaaccaatttgatcacaacttatt 9346  T

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