View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_25 (Length: 314)
Name: NF19045_low_25
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 101 - 298
Target Start/End: Complemental strand, 12380516 - 12380319
Alignment:
| Q |
101 |
tatgtgaaacatgtttaaagtaattcatcatgtgtcatatgaatgtacaaaaagtgagtgattatgttttgttactgttagtttattaaaagagtatgtt |
200 |
Q |
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| T |
12380516 |
tatgtgagacatgtttaaagtaattcatcatgtgtcatatgaatgtacaaaaagtgagtgattatgttttgttactgttagtttattaaaagagtaagtt |
12380417 |
T |
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| Q |
201 |
aaaaataaattaccggatttcgaatgacaatggaagggctagcaccccaattgtggaggtcataagcaatctccattcctgagttaccacatccaact |
298 |
Q |
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| T |
12380416 |
aaaaaaaaattaccggatttcgaatgacaatggaagcgctagcaccccaattgtggaggtcataagcaatctccattcctgagttaccacacccaact |
12380319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 12380892 - 12380825
Alignment:
| Q |
13 |
aatatgaaccggcaaatacttcaccatacgcattccttggtgaatcatttctctggtgaagacatgca |
80 |
Q |
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| T |
12380892 |
aatatgaaccggcaaatacttcaccatacgcattccttggtgaatcatttccctagtgaagacatgca |
12380825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 14352976 - 14352888
Alignment:
| Q |
210 |
ttaccggatttcgaatgacaatggaagggctagcaccccaattgtggaggtcataagcaatctccattcctgagttaccacatccaact |
298 |
Q |
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| T |
14352976 |
ttaccggacttcgaaccacaatagatgggttagcacccgagttatggaggtcataagcaatctccattcctgagttaccacatccaact |
14352888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 14353698 - 14353641
Alignment:
| Q |
26 |
aaatacttcaccatacgcattccttggtgaatcatttctctggtgaagacatgcaact |
83 |
Q |
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| T |
14353698 |
aaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatgaaact |
14353641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 43884179 - 43884244
Alignment:
| Q |
19 |
aaccggcaaatacttcaccatacgcattccttggtgaatcatttctctggtgaagacatgcaactg |
84 |
Q |
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| T |
43884179 |
aaccggcaaataattcaccattcgcatcccttgacgaatcatttctctactgaagacatgaaactg |
43884244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 43886229 - 43886286
Alignment:
| Q |
241 |
agcaccccaattgtggaggtcataagcaatctccattcctgagttaccacatccaact |
298 |
Q |
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| T |
43886229 |
agcaccccagttatggagatcataagcaatctccatttatgagttaccacacccaact |
43886286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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