View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_26 (Length: 304)
Name: NF19045_low_26
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 43 - 286
Target Start/End: Complemental strand, 42454128 - 42453885
Alignment:
| Q |
43 |
taaataaaatattcatcattaaaaacaaaataactaagcaaattgcatctgcatcaatgttggcttattcctaatttcctgataaaaaagaaccatagag |
142 |
Q |
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| T |
42454128 |
taaataaaatattcatcattaaaaacaaaataactaagcaaattgcatctgcatcaatgttggcttattcctaatttcctgataaaaaagaaccatagag |
42454029 |
T |
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| Q |
143 |
ctgcattttcatatcatgctatctaattttgaaggcatccttcgaatccaattttcataaaatggaggaaaaggtgaacggaacattggatgccttagaa |
242 |
Q |
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| T |
42454028 |
ctgcattttcatatcatgctatctaattttgaaggcatccttcgaatccaattttcataaaatggaggaaaaggtgaacggaacattggatgccttagaa |
42453929 |
T |
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| Q |
243 |
aataaagaaaccaaacaaagacaagatatcggaaaggaacagcc |
286 |
Q |
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| T |
42453928 |
aataaagaaaccaaacaaagacaagatatcggaaaggaacagcc |
42453885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 47973357 - 47973419
Alignment:
| Q |
95 |
atcaatgttggcttattcctaatttcctgataaaaaagaaccatagagctgcattttcatatcat |
159 |
Q |
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| T |
47973357 |
atcaatgttggcttattcctaa-ttcctaat-aaaaagaaccacaaagttgcactttcatatcat |
47973419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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