View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_28 (Length: 298)
Name: NF19045_low_28
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 11000144 - 10999879
Alignment:
| Q |
15 |
tatattgcaatcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttggagggaataa |
114 |
Q |
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| T |
11000144 |
tatattgtaatcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttggagggaataa |
11000045 |
T |
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| Q |
115 |
ttagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaa |
214 |
Q |
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| T |
11000044 |
ttagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaa |
10999945 |
T |
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| Q |
215 |
tcaattggtcgttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctt |
280 |
Q |
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| T |
10999944 |
tcaattggtcgttgtcctcacatgataagatgtacctattgtcaccacagttttcgggactgtctt |
10999879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 11003107 - 11002856
Alignment:
| Q |
29 |
caaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttggagggaataattagagtgaccaag |
128 |
Q |
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| T |
11003107 |
caaacactctatatggcaaggctattggattgatggtccttgaatcgaaactatagaagcctagtggatgaggtgggagggaataattagagtaaccatg |
11003008 |
T |
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| Q |
129 |
attattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcgttg |
228 |
Q |
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| T |
11003007 |
actattgaaatccaatagacgtatagtgaagttattgtaattaattgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggttgttg |
11002908 |
T |
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| Q |
229 |
tcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctt |
280 |
Q |
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| T |
11002907 |
tcctcacatgataagatgtaccttttgtcaccacagttttcgggactgtctt |
11002856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 126 - 280
Target Start/End: Original strand, 10988373 - 10988527
Alignment:
| Q |
126 |
aagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcg |
225 |
Q |
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|||| ||||||||| | ||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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| T |
10988373 |
aagaatattgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattg |
10988472 |
T |
|
| Q |
226 |
ttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctt |
280 |
Q |
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| T |
10988473 |
ttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctt |
10988527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 126 - 280
Target Start/End: Original strand, 11019541 - 11019695
Alignment:
| Q |
126 |
aagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcg |
225 |
Q |
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|||| ||||||||| | ||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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| T |
11019541 |
aagaatattgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattg |
11019640 |
T |
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| Q |
226 |
ttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctt |
280 |
Q |
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| T |
11019641 |
ttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctt |
11019695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 11034918 - 11035066
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcgttgtcc |
231 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||| |
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| T |
11034918 |
attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttccaaatgaatcatggtacaaaatcaattgattgttgtcc |
11035017 |
T |
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| Q |
232 |
tcacatgataagatgtacctattgtcaccacacttttcgggactgtctt |
280 |
Q |
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|||||||||| | ||||||| | ||| ||||| | || |||||||||| |
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| T |
11035018 |
tcacatgataggttgtacctttcgtcgccacattctttaggactgtctt |
11035066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 132 - 278
Target Start/End: Original strand, 10905496 - 10905639
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcgttgtcc |
231 |
Q |
| |
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|||||||||||||| |||||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| ||||| | ||||| |
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| T |
10905496 |
attgaaatccaatagccgtatggtgaaattgttgtaattaattgattgtacataatattttccaaatgatccatagttcaaaattaattg---gctgtcc |
10905592 |
T |
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| Q |
232 |
tcacatgataagatgtacctattgtcaccacacttttcgggactgtc |
278 |
Q |
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| T |
10905593 |
tcacatgataagatgtaccttttgtcaccacagtgtttgggactgtc |
10905639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 11009505 - 11009662
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaa-------tgaac--catagtacaaaatcaattgg |
222 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
11009505 |
attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttccatggtattcttcaaattcatagtacaaaatcaattgg |
11009604 |
T |
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| Q |
223 |
tcgttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctt |
280 |
Q |
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| T |
11009605 |
ttattgtcctcacatgataggatgtaccttttgtcaccacacttttcaggactgtctt |
11009662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 280
Target Start/End: Original strand, 10921999 - 10922214
Alignment:
| Q |
71 |
aagtgaaattatacaagcctagtggatgaggttggagggaataattagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaatt |
170 |
Q |
| |
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||||||||||||| | |||||||| ||| || |||||| | ||||||||| ||||| ||| || |||||||| |||||| || ||||||||||||| |
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| T |
10921999 |
aagtgaaattatagaggcctagtgaatggggagggagggtaaaattagagtaaccaaaatt---gacatccaatagtcgtatagtgtagttgttgtaatt |
10922095 |
T |
|
| Q |
171 |
aatcgattgtacata------------gtattttccaaatgaaccatagtacaaaatcaattggtcgttgtcctcacatgataagatgtacctattgtca |
258 |
Q |
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| T |
10922096 |
aattgattgtacataaaatttaccatggttttttccaaatt---catagtacaaaatcaactggttgttgtcctcacatgataagatgtatcttttgtca |
10922192 |
T |
|
| Q |
259 |
ccacacttttcgggactgtctt |
280 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
10922193 |
ccacactttttaggactgtctt |
10922214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 10975550 - 10975688
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttcc---aaatgaacc------atagtacaaaatcaattgg |
222 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||||| ||||||||| |
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| T |
10975550 |
attgaaatccaatagccgtatggtaaagttgttgtaattaattgattgtacataatattttccggtgtatttcccaactttatagtacaagatcaattgg |
10975649 |
T |
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| Q |
223 |
tcgttgtcctcacatgataagatgtacctattgtcacca |
261 |
Q |
| |
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|
| T |
10975650 |
ttgttgtcctcacatgataagatatacctcttgtcacca |
10975688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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