View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_3 (Length: 637)
Name: NF19045_low_3
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 31 - 622
Target Start/End: Complemental strand, 4396414 - 4395823
Alignment:
| Q |
31 |
aataataaattaaaacaatagtttaacttgtgtttttgtcataaatctctggtttccaagggtaaagggttggttctagtaatccagagttcaacggaat |
130 |
Q |
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| T |
4396414 |
aataataaattaaaacaatagtttaacttgtgtttttgtcataaatctctggtttccaagggtaaagggttggttctagtaatccagagttcaacggaat |
4396315 |
T |
|
| Q |
131 |
gtaggtaaaatctggcttgaaactctctactcccaatggattcgatcttcaacgaagtttcattaacccctagtgtctatttggttggctaaaattaaat |
230 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4396314 |
gtaggtaaaatctggcttcaaactctctactcccaatcgattcgatcttcaacgaagtttcattaacccctagtgtctatttggttggctaaaattaaat |
4396215 |
T |
|
| Q |
231 |
ttaaatgaattaattatgactaaaattagttgaaaaatatattcaagtgtaaaaatcaattctataatccaaagctcgaaatcaaatacaaaatcaccat |
330 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
4396214 |
ttaaatgaattaattatgactaaaattagttgaacaatatattcaactgtaaaaatcaattctataatccaaagctcaaaatcaaatacaaaatctccat |
4396115 |
T |
|
| Q |
331 |
accgtttgtttgagatgnnnnnnntcccacttagaaacagagccatccaaattagaagaaaacaaacgaccaaaatcggaaccattacaccaaacaagcg |
430 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4396114 |
accgtttgtttgagatgaaaaaaatcccacttagaaacagagccatccaaattagaagaaaacaaacgaccaaaatcggaaccattacaccaaacaagcg |
4396015 |
T |
|
| Q |
431 |
aagaaactcttttattaggatcaccacgaatggttaactgacaatgccaacggtcagagccgggagagacgagccaaagctcgagggaaccgtcttcgcg |
530 |
Q |
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| T |
4396014 |
aagaaactcttttattaggatcaccacgaatggttaactgacaatgccaacggtcagagccgggagagacgagccagagctcgagggaaccgtcttcgcg |
4395915 |
T |
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| Q |
531 |
agcagcggcaacacgtaagccgtcgacgctggtggctagtgcaatgacaggtgatggtttccaatcaatttgtaaaccgtcgaccttcgtga |
622 |
Q |
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| T |
4395914 |
agcagcggcaacacgtaagccgtcgacgctggtggctagtgcaatgacaggtgatggtttccaatcaatttgtaaaccgtcgaccttcgtga |
4395823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 37335038 - 37335092
Alignment:
| Q |
252 |
aaaattagttgaaaaatatattcaagtgtaaaaatcaattctataatccaaagct |
306 |
Q |
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| T |
37335038 |
aaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagct |
37335092 |
T |
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