View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_low_34 (Length: 287)

Name: NF19045_low_34
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_low_34
NF19045_low_34
[»] chr1 (9 HSPs)
chr1 (24-287)||(11003348-11003607)
chr1 (123-287)||(11000368-11000532)
chr1 (199-287)||(11009082-11009170)
chr1 (211-287)||(11034495-11034571)
chr1 (194-285)||(10975113-10975204)
chr1 (199-285)||(10905207-10905293)
chr1 (193-287)||(10921610-10921704)
chr1 (202-261)||(10987980-10988039)
chr1 (202-261)||(11019148-11019207)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 11003607 - 11003348
Alignment:
Q  24 acattttcttttaaacatggtataaatggcaaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacaga--agaagnnnnnnnc 121  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||       |    
T  11003607 acattttcttttaaacatggtataaatggtcaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacagagaagaagaaaaaaac 11003508  T
Q  122 tttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagac 221  Q
    |||||||||||||| ||||||||||||||| |||||||||      |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11003507 tttgaggaagtcgtttggagaaaattacctgaaggtgcac------gacgttggttattgtaatcgaggatgtctgaataccaaccatgtttacaaagac 11003414  T
Q  222 tattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgt 287  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11003413 tattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgt 11003348  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 11000532 - 11000368
Alignment:
Q  123 ttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagact 222  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||    
T  11000532 ttgaggaagtcgtttggagaaaattacctaaacgtgcacaaccacgacgttggttattgtaatcgaggatttctgaataccaaccatgtttacaaaggct 11000433  T
Q  223 attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  11000432 attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgttgt 11000368  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 11009082 - 11009170
Alignment:
Q  199 ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgt 287  Q
    ||||| ||||||||||||  |||| |||||||| |||||||||||||||||| ||||| |||||||||| || ||||||||||||||||    
T  11009082 ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgt 11009170  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 11034495 - 11034571
Alignment:
Q  211 tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgt 287  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  11034495 tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgttgt 11034571  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 10975113 - 10975204
Alignment:
Q  194 tctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt 285  Q
    |||| ||||| |||||| || |||| |||||||||||| |||| ||||||||||||| ||||||||||||| |  ||| | |||||||||||    
T  10975113 tctgcataccgaccatgattgcaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt 10975204  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 10905207 - 10905293
Alignment:
Q  199 ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt 285  Q
    |||||||||||| ||  ||| |||||||||||| |||| ||||||||||||| ||||||||||||| |  ||| | |||||||||||    
T  10905207 ataccaaccatgattgtaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt 10905293  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 10921610 - 10921704
Alignment:
Q  193 gtctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgt 287  Q
    ||||| |||||| |||| |||||||| ||| |||||||| |||||||||||||||||||| |||  |||||| || || || || ||||||||||    
T  10921610 gtctgcataccatccatctttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgt 10921704  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 10987980 - 10988039
Alignment:
Q  202 ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacg 261  Q
    |||| ||| ||||||||||||||||||||| || | ||||||||||||| ||||||||||    
T  10987980 ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacg 10988039  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 11019148 - 11019207
Alignment:
Q  202 ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacg 261  Q
    |||| ||| ||||||||||||||||||||| || | ||||||||||||| ||||||||||    
T  11019148 ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacg 11019207  T

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