View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19045_low_36 (Length: 276)

Name: NF19045_low_36
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19045_low_36
NF19045_low_36
[»] chr3 (6 HSPs)
chr3 (1-263)||(36496866-36497128)
chr3 (113-210)||(36502332-36502428)
chr3 (128-175)||(36501618-36501665)
chr3 (114-160)||(35653122-35653167)
chr3 (107-159)||(2288429-2288480)
chr3 (133-169)||(5492251-5492287)
[»] chr8 (3 HSPs)
chr8 (139-204)||(36228536-36228601)
chr8 (139-204)||(32318075-32318140)
chr8 (114-197)||(7088901-7088983)
[»] chr1 (5 HSPs)
chr1 (133-173)||(26284645-26284685)
chr1 (139-174)||(19138872-19138907)
chr1 (107-152)||(47693970-47694014)
chr1 (139-203)||(13649499-13649563)
chr1 (113-169)||(15248876-15248931)
[»] chr5 (3 HSPs)
chr5 (133-175)||(39933456-39933498)
chr5 (133-175)||(39933559-39933601)
chr5 (113-197)||(22967147-22967230)
[»] chr4 (2 HSPs)
chr4 (114-175)||(49574078-49574139)
chr4 (113-173)||(46577503-46577563)
[»] chr6 (2 HSPs)
chr6 (107-159)||(8172950-8173002)
chr6 (116-175)||(30373077-30373135)
[»] scaffold0006 (1 HSPs)
scaffold0006 (139-174)||(139308-139343)
[»] chr2 (2 HSPs)
chr2 (116-175)||(3769332-3769390)
chr2 (113-197)||(44944038-44944121)
[»] scaffold0025 (1 HSPs)
scaffold0025 (133-175)||(150370-150412)
[»] chr7 (1 HSPs)
chr7 (146-175)||(17917127-17917156)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 36496866 - 36497128
Alignment:
Q  1 ccttcaaatttcaagtatagggtttcattacaaaaacaggtcatactttaaattcatcaacgcaatgttcagttgatcattttggagtgtggttaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496866 ccttcaaatttcaagtatagggtttcattacaaaaacaggtcatactttaaattcatcaacgcaatgttcagttgatcattttggagtgtggttaaatga 36496965  T
Q  101 taaatgatatatatatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496966 taaatgatatatatatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattatt 36497065  T
Q  201 aaaagtgcagcatatagtcaattcaaccccttgtgatcttctctcgccgccgtcttgtctctg 263  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36497066 aaaactgcagcatatagtcaattcaaccccttgtgatcttctctcgccgccgtctcgtctctg 36497128  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 36502428 - 36502332
Alignment:
Q  113 atatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattattaaaagtgcag 210  Q
    ||||||||||||||  ||| ||||||||||||||||||||||| ||||  |||| || ||| | | ||||||||| ||||||||| | |||| |||||    
T  36502428 atatcaagtgagaggagtt-ttattgtgagagatgagagggtttaatcctaaccattggattaatctttactgtgatatttaattttaaaaattgcag 36502332  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 36501665 - 36501618
Alignment:
Q  128 ggttgttattgtgagagatgagagggttaaatcacaacccttagatca 175  Q
    |||| |||||||||||||||||||| |||| ||||||||||| |||||    
T  36501665 ggtttttattgtgagagatgagaggattaagtcacaacccttggatca 36501618  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 35653122 - 35653167
Alignment:
Q  114 tatcaagtgagagtggttgttattgtgagagatgagagggttaaatc 160  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  35653122 tatcaagtgagaggagtt-ttattgtgagagatgagagggttaaatc 35653167  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 2288480 - 2288429
Alignment:
Q  107 atatatatatcaagtgagagtggttgttattgtgagagatgagagggttaaat 159  Q
    ||||||||||||| | ||||  ||| |||||||||||||||||||||||||||    
T  2288480 atatatatatcaaataagaggagtt-ttattgtgagagatgagagggttaaat 2288429  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 5492287 - 5492251
Alignment:
Q  133 ttattgtgagagatgagagggttaaatcacaaccctt 169  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  5492287 ttattatgagaggtgagagggttaaatcacaaccctt 5492251  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 36228536 - 36228601
Alignment:
Q  139 tgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattattaaaa 204  Q
    |||||||||||||||| |||||||||||||||||||| | |||| ||||||| |||| | ||||||    
T  36228536 tgagagatgagagggtgaaatcacaacccttagatcaatctttattgtgttacttaaattttaaaa 36228601  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 32318075 - 32318140
Alignment:
Q  139 tgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattattaaaa 204  Q
    ||||||||||||||||||||| ||||||||| ||||| | | || ||||||| |||||| ||||||    
T  32318075 tgagagatgagagggttaaattacaacccttggatcaatctatattgtgttacttaatttttaaaa 32318140  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 7088901 - 7088983
Alignment:
Q  114 tatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaatt 197  Q
    |||||||||||||||||| ||||| |||||| |||||||  ||||||||| ||||| ||||| |  ||||| || |||||||||    
T  7088901 tatcaagtgagagtggtt-ttattatgagaggtgagaggagtaaatcacagcccttggatcaatcattactatgatatttaatt 7088983  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 26284645 - 26284685
Alignment:
Q  133 ttattgtgagagatgagagggttaaatcacaacccttagat 173  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  26284645 ttattatgagagatgagagggttaaatcacaacccttagat 26284685  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 19138872 - 19138907
Alignment:
Q  139 tgagagatgagagggttaaatcacaacccttagatc 174  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19138872 tgagagatgagagggttaaatcacaacccttggatc 19138907  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 47693970 - 47694014
Alignment:
Q  107 atatatatatcaagtgagagtggttgttattgtgagagatgagagg 152  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  47693970 atatatatatcaagtgagaggagtt-ttattgtgagagatgagagg 47694014  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 13649563 - 13649499
Alignment:
Q  139 tgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattattaaa 203  Q
    |||||||||| |||||||||||||||||||| ||||  | || | ||||||| |||||| |||||    
T  13649563 tgagagatgatagggttaaatcacaacccttggatccatcttaattgtgttacttaatttttaaa 13649499  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 15248876 - 15248931
Alignment:
Q  113 atatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaaccctt 169  Q
    |||||||||||||| | || |||  |||||||||||||||||||||||| |||||||    
T  15248876 atatcaagtgagagggctt-ttacagtgagagatgagagggttaaatcataaccctt 15248931  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 39933456 - 39933498
Alignment:
Q  133 ttattgtgagagatgagagggttaaatcacaacccttagatca 175  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  39933456 ttattgtgagagatgagagggttaaatcataaccctttgatca 39933498  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 39933601 - 39933559
Alignment:
Q  133 ttattgtgagagatgagagggttaaatcacaacccttagatca 175  Q
    |||||||||||||| |||||||||||||| ||||||| |||||    
T  39933601 ttattgtgagagataagagggttaaatcataacccttggatca 39933559  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 22967230 - 22967147
Alignment:
Q  113 atatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaatt 197  Q
    |||||||||||||| | || |||||||||||||||||||||||| |||   ||| |||||| | | |||| |||||| |||||||    
T  22967230 atatcaagtgagag-gttttttattgtgagagatgagagggttagatcctgaccattagattaatttttattgtgttctttaatt 22967147  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 49574078 - 49574139
Alignment:
Q  114 tatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatca 175  Q
    |||||||||||||  ||| |||   |||||| ||||||||||||||||||||||||||||||    
T  49574078 tatcaagtgagaggagttcttaaaatgagaggtgagagggttaaatcacaacccttagatca 49574139  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 46577503 - 46577563
Alignment:
Q  113 atatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagat 173  Q
    |||||||||||||||| || ||||| |||||| |||||||||| ||||  |||||||||||    
T  46577503 atatcaagtgagagtgctttttattatgagaggtgagagggttgaatcctaacccttagat 46577563  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 8172950 - 8173002
Alignment:
Q  107 atatatatatcaagtgagagtggttgttattgtgagagatgagagggttaaat 159  Q
    |||||||||||||||||||| | || |||| ||||||||||||||||| ||||    
T  8172950 atatatatatcaagtgagagagatttttatggtgagagatgagagggtgaaat 8173002  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 30373135 - 30373077
Alignment:
Q  116 tcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatca 175  Q
    ||||||||||| |||| ||||| ||||||||||||| ||||||| ||||||||| |||||    
T  30373135 tcaagtgagag-ggtttttattatgagagatgagagtgttaaattacaacccttggatca 30373077  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 139343 - 139308
Alignment:
Q  139 tgagagatgagagggttaaatcacaacccttagatc 174  Q
    ||||||||||||||||||||||||||||||| ||||    
T  139343 tgagagatgagagggttaaatcacaacccttggatc 139308  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 3769390 - 3769332
Alignment:
Q  116 tcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatca 175  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  3769390 tcaagtgagag-ggtttttattgtgagagatgagagtgttaagttacaacccttggatca 3769332  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 44944121 - 44944038
Alignment:
Q  113 atatcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaatt 197  Q
    ||||||||||||| || || |||||||||||||||||||||||| |||   ||| |||||| | | |||| |||||| |||||||    
T  44944121 atatcaagtgaga-tgttttttattgtgagagatgagagggttagatcctgaccattagattaatttttattgtgttctttaatt 44944038  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 150370 - 150412
Alignment:
Q  133 ttattgtgagagatgagagggttaaatcacaacccttagatca 175  Q
    |||||||||||||||||||||||||| || ||||||| |||||    
T  150370 ttattgtgagagatgagagggttaaaccataacccttcgatca 150412  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 17917127 - 17917156
Alignment:
Q  146 tgagagggttaaatcacaacccttagatca 175  Q
    ||||||||||||||||||||||||||||||    
T  17917127 tgagagggttaaatcacaacccttagatca 17917156  T

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