View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_37 (Length: 267)
Name: NF19045_low_37
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 11003367 - 11003125
Alignment:
| Q |
16 |
atccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaagaaacatcaactctatacgacactcatctcccagagccaattccaaa |
115 |
Q |
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| T |
11003367 |
atccgtacaagaaatgttgttgtttccaccatgcttaaaatcccaagatgtaagaaacatcaactctatacgacactcatctcccagagccaattccaaa |
11003268 |
T |
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| Q |
116 |
agagatttgtccccaaacacaatatagttccctttctgctgctcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaatatt |
215 |
Q |
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| T |
11003267 |
agagatttgtccccaaacacaatatagttccctttctgctgttcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaatatt |
11003168 |
T |
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| Q |
216 |
ggacatgtttaggacatgtcacatataacatagagttgaacaa |
258 |
Q |
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| T |
11003167 |
ggacatgtttgggacatgtcacatataacatagacttgaacaa |
11003125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 258
Target Start/End: Complemental strand, 11000373 - 11000148
Alignment:
| Q |
33 |
tgttgttgccaccatgcttaaaatcccaagatgtaagaaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgtccccaaa |
132 |
Q |
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| T |
11000373 |
tgttgttgccaccatgttcaaaaggccaagatgtaagaaacatcaactctatacgacatccatctcctagaccaaattccaaaagagatctgtccccaaa |
11000274 |
T |
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| Q |
133 |
cacaatatagttccctttctgctgctcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttaggacat |
232 |
Q |
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| T |
11000273 |
cacaatatagttccctttctgctgctcataagaattactaatgttcatacaagcagcatcaaagtaaatacctgaagaatattggacatgtttaggacat |
11000174 |
T |
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| Q |
233 |
gtcacatataacatagagttgaacaa |
258 |
Q |
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| T |
11000173 |
gtcacatataacatagagttgaacaa |
11000148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 10921855 - 10921935
Alignment:
| Q |
168 |
tactaatgttcatacaagc---agcatcaaagtaaatacctgaagaatattggacatgtttaggacatgtcacatataaca |
245 |
Q |
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| T |
10921855 |
tactaatgttcatacaggccggagaagcaaagtaaataccagaagaatattggacatgattcggacatctcatatataaca |
10921935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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