View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19045_low_4 (Length: 622)
Name: NF19045_low_4
Description: NF19045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19045_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 124 - 608
Target Start/End: Complemental strand, 36496685 - 36496198
Alignment:
| Q |
124 |
caggtaacataatgttggtcaaaattatggtttatgtaccttagactatgtatattatattatattgcactatagtccatttcatatgcataatatgaca |
223 |
Q |
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| T |
36496685 |
caggtaacataatgttggtcaaaattatggtttatgtaccttagactatgtatattatattatattgcactatagtccatttcatatgcataatatgaca |
36496586 |
T |
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| Q |
224 |
aagcctaataatataagaaatggttcaaggcatgataaaa-ttttgatgataaatatttggtatgacattgataaatatttgataagaaaatacgctacc |
322 |
Q |
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| T |
36496585 |
aggcctaataatataagaaatggtgcaaggcatgataaaaattttgatgataaatatttggtatgacattgataaatatttgataagaaaatacgctacc |
36496486 |
T |
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| Q |
323 |
ttgcactgacaaaggcacagccaatgctgcagcagcttgtatcctgatcttaaaatttgatgaattatgtaatagctgcagaagaatgccaaacacgact |
422 |
Q |
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| T |
36496485 |
ttgcactgacaaaggcacagccaatgctgcagcagcttgtatcctgatcttaaaatttgatgaattatgtaatagctgcagaagaatgccaaacacgact |
36496386 |
T |
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| Q |
423 |
ggagccctgcaaacattgttccattaccatagtttattttgatgtagtagggttttagtcttttagg--tatagaaggaggaaaaggaaaacttacgaat |
520 |
Q |
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| T |
36496385 |
ggagccctgcaaacattgttccattaccatagtttattttgatgtagtagggttttagtcttttaggtatatagaaggaggaaaaggaaaacttacaaat |
36496286 |
T |
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| Q |
521 |
caaaaaatcatatagatttgatatcaatgatataatgtacgttgttagagaagacaaatcactaatccttatccttattgatattaat |
608 |
Q |
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| T |
36496285 |
caaaaaatcatatagatttgatatcaacgatataatgtacgttgttagagaatacaaatcactaatccttatccttattgatactaat |
36496198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 36496802 - 36496718
Alignment:
| Q |
4 |
gaaggatcgtccataatctgctaaaacacgggagaacaagttatattcaaataacggcttgggatttaaacttctttgaatgatg |
88 |
Q |
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| T |
36496802 |
gaaggatcgtccataatctgctaaaacacgggagaacaagttatattcaaataacggcttgggatttaaacttctttgaatgatg |
36496718 |
T |
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